Issues

• extract_tracts.py outputs gzipped vcfs instead of bgzipped

  Atkinson-Lab/Tractor#55 · Filter by author pettyalex opened on Jul 27, 2026

• Error in anti-join when user provides a sampleIDcol that is not IID but there is also an IID column in the file

  Atkinson-Lab/Tractor#54 · Filter by author jtb324 opened on Jan 28, 2026

• Issue: There is no warning or failure when the input VCF to extract_tracts.py is empty

  Atkinson-Lab/Tractor#52 · Filter by author jtb324 opened on Jan 21, 2026

• Inflated lambda values

  Atkinson-Lab/Tractor#51 · Filter by author GabrielCabas opened on Jan 16, 2026

• Question about what happens if hapcount/dosage files contain people who are not in your phenotype file

  Atkinson-Lab/Tractor#50 · Filter by author jtb324 opened on Nov 20, 2025
  2

• Unexpectedly high thread count / CPU usage

  Atkinson-Lab/Tractor#46 · Filter by author pettyalex opened on Apr 1, 2025
  1

• run_tractor.R: Option to output ancestry allele frequencies by group

  Atkinson-Lab/Tractor#43 · Filter by author la-mendicino opened on Nov 13, 2024
  1

• FLARE: Recovering Haplotypes Disrupted by Statistical Phasing

  Atkinson-Lab/Tractor#42 · Filter by author la-mendicino opened on Oct 28, 2024
  3