diff --git a/docs/Dockerfile b/docs/Dockerfile
new file mode 100644
index 000000000..20514e8aa
--- /dev/null
+++ b/docs/Dockerfile
@@ -0,0 +1,10 @@
+#Dockerfile for documentation
+#
+#
+#
+#
+
+FROM sphinxdoc/sphinx
+WORKDIR /docs
+ADD requirements.txt /docs
+RUN pip3 install -r requirements.txt
diff --git a/modules/local/align_reads.nf b/modules/local/align_reads.nf
index 1a5fd618e..472a8a25f 100644
--- a/modules/local/align_reads.nf
+++ b/modules/local/align_reads.nf
@@ -15,7 +15,7 @@ process ALIGN_READS {
 
     conda (params.enable_conda ? "bioconda::autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/modules/local/binning.nf b/modules/local/binning.nf
index a8b9ebba3..877a65014 100644
--- a/modules/local/binning.nf
+++ b/modules/local/binning.nf
@@ -11,7 +11,7 @@ process BINNING {
 
     conda (params.enable_conda ? "bioconda::autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/modules/local/binning_summary.nf b/modules/local/binning_summary.nf
index ad5554e6d..f0c8010db 100644
--- a/modules/local/binning_summary.nf
+++ b/modules/local/binning_summary.nf
@@ -12,7 +12,7 @@ process BINNING_SUMMARY {
 
     conda (params.enable_conda ? "bioconda::autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/modules/local/hmmer_hmmsearch_filter.nf b/modules/local/hmmer_hmmsearch_filter.nf
index a21be8b3a..26d1d8cee 100644
--- a/modules/local/hmmer_hmmsearch_filter.nf
+++ b/modules/local/hmmer_hmmsearch_filter.nf
@@ -24,7 +24,7 @@ process HMMER_HMMSEARCH_FILTER {
 
     conda (params.enable_conda ? "autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/modules/local/length_table.nf b/modules/local/length_table.nf
index d6b95de69..a94c76833 100644
--- a/modules/local/length_table.nf
+++ b/modules/local/length_table.nf
@@ -12,7 +12,7 @@ process LENGTH_TABLE {
 
     conda (params.enable_conda ? "bioconda::autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/modules/local/majority_vote.nf b/modules/local/majority_vote.nf
index 846773a1b..6271b7bd2 100644
--- a/modules/local/majority_vote.nf
+++ b/modules/local/majority_vote.nf
@@ -12,7 +12,7 @@ process MAJORITY_VOTE {
 
     conda (params.enable_conda ? "bioconda::autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/modules/local/markers.nf b/modules/local/markers.nf
index 5f458ad8b..5835735b7 100644
--- a/modules/local/markers.nf
+++ b/modules/local/markers.nf
@@ -13,7 +13,7 @@ process MARKERS {
 
     conda (params.enable_conda ? "autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/modules/local/prepare_lca.nf b/modules/local/prepare_lca.nf
index e11015153..ce712cd3f 100644
--- a/modules/local/prepare_lca.nf
+++ b/modules/local/prepare_lca.nf
@@ -10,7 +10,7 @@ process PREPARE_LCA {
 
     conda (params.enable_conda ? "bioconda::autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/modules/local/reduce_lca.nf b/modules/local/reduce_lca.nf
index 3424d2255..031564557 100644
--- a/modules/local/reduce_lca.nf
+++ b/modules/local/reduce_lca.nf
@@ -12,7 +12,7 @@ process REDUCE_LCA {
 
     conda (params.enable_conda ? "bioconda::autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/modules/local/spades_kmer_coverage.nf b/modules/local/spades_kmer_coverage.nf
index 6e803c6ef..5f36cc335 100644
--- a/modules/local/spades_kmer_coverage.nf
+++ b/modules/local/spades_kmer_coverage.nf
@@ -12,7 +12,7 @@ process SPADES_KMER_COVERAGE {
 
     conda (params.enable_conda ? "autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/modules/local/split_kingdoms.nf b/modules/local/split_kingdoms.nf
index f93c12fd8..396cd828e 100644
--- a/modules/local/split_kingdoms.nf
+++ b/modules/local/split_kingdoms.nf
@@ -12,7 +12,7 @@ process SPLIT_KINGDOMS {
 
     conda (params.enable_conda ? "bioconda::autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/modules/local/unclustered_recruitment.nf b/modules/local/unclustered_recruitment.nf
index dee238caf..460bf1b9a 100644
--- a/modules/local/unclustered_recruitment.nf
+++ b/modules/local/unclustered_recruitment.nf
@@ -12,7 +12,7 @@ process RECRUIT {
 
     conda (params.enable_conda ? "autometa" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/subworkflows/local/prepare_ncbi_taxinfo.nf b/subworkflows/local/prepare_ncbi_taxinfo.nf
index b11c39c7c..3132f15c1 100644
--- a/subworkflows/local/prepare_ncbi_taxinfo.nf
+++ b/subworkflows/local/prepare_ncbi_taxinfo.nf
@@ -71,7 +71,7 @@ process DOWNLOAD_TAXDUMP {
 
     conda (params.enable_conda ? "conda-forge::rsync=3.2.3" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
diff --git a/subworkflows/local/prepare_nr.nf b/subworkflows/local/prepare_nr.nf
index da70d61cc..0d1de4b68 100644
--- a/subworkflows/local/prepare_nr.nf
+++ b/subworkflows/local/prepare_nr.nf
@@ -16,7 +16,7 @@ process DOWNLOAD_NR {
 
     conda (params.enable_conda ? "conda-forge::rsync=3.2.3" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
@@ -46,7 +46,7 @@ process TEST_DOWNLOAD {
 
     conda (params.enable_conda ? "conda-forge::rsync=3.2.3" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
+        container "https://depot.galaxyproject.org/singularity/autometa:2.2.0--pyh7cba7a3_0"
     } else {
         container "jasonkwan/autometa:${params.autometa_image_tag}"
     }