From 50b7a998d9447e61b397d2c0cb56c396ae8e53f5 Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Wed, 11 Sep 2024 17:08:34 +0100 Subject: [PATCH 1/2] Feedback Issues Feedback Issues --- .../ConceptMap-Genomics-condition-solidtumourtype.json | 2 +- ...onceptMap-Genomics-fetal-maternal-screening-genotype.json | 2 +- ConceptMap/ConceptMap-Genomics-patientbirthsex.json | 2 +- ConceptMap/ConceptMap-Genomics-patientpregnancytype.json | 2 +- .../ConceptMap-Genomics-procedure-transfusiontype.json | 2 +- ConceptMap/ConceptMap-Genomics-reportdeliverymethod.json | 5 +++-- ConceptMap/ConceptMap-Genomics-specimen-final-sample.json | 1 - .../ConceptMap-Genomics-typeof-transplantprocedure.json | 3 +-- 8 files changed, 9 insertions(+), 10 deletions(-) diff --git a/ConceptMap/ConceptMap-Genomics-condition-solidtumourtype.json b/ConceptMap/ConceptMap-Genomics-condition-solidtumourtype.json index 434880b..9694531 100644 --- a/ConceptMap/ConceptMap-Genomics-condition-solidtumourtype.json +++ b/ConceptMap/ConceptMap-Genomics-condition-solidtumourtype.json @@ -20,7 +20,7 @@ } ], "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", - "purpose": "ConceptMap used for the translation and recording of concepts when Condition.code field = solid tumour types", + "purpose": "ConceptMap used for the translation and recording of concepts for solid tumour types. This is intended for the element Condition.note", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", "group": [ { diff --git a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json index ebe7a30..285c912 100644 --- a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json +++ b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json @@ -20,7 +20,7 @@ } ], "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", - "purpose": "ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.clinicalStatus", + "purpose": "ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.code. An appropriate SNOMED CT code or free text should be used to record the Genotype.", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", "targetUri": "http://snomed.info/sct", "group": [ diff --git a/ConceptMap/ConceptMap-Genomics-patientbirthsex.json b/ConceptMap/ConceptMap-Genomics-patientbirthsex.json index a5b9395..6a9ded4 100644 --- a/ConceptMap/ConceptMap-Genomics-patientbirthsex.json +++ b/ConceptMap/ConceptMap-Genomics-patientbirthsex.json @@ -20,7 +20,7 @@ } ], "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", - "purpose": "ConceptMap used for the translation and recording of concept for Patient.BirthSex field, i.e., sexual identity assigned to patient at birth", + "purpose": "ConceptMap used for the translation and recording of concept for sexual identity assigned to patient at birth. This is intended for the element Patient.extension:birthSex", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", "targetUri": "https://fhir.hl7.org.uk/ValueSet/UKCore-BirthSex", "group": [ diff --git a/ConceptMap/ConceptMap-Genomics-patientpregnancytype.json b/ConceptMap/ConceptMap-Genomics-patientpregnancytype.json index 1a28b17..b7d0155 100644 --- a/ConceptMap/ConceptMap-Genomics-patientpregnancytype.json +++ b/ConceptMap/ConceptMap-Genomics-patientpregnancytype.json @@ -20,7 +20,7 @@ } ], "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", - "purpose": "ConceptMap used for the translation and recording of concepts for patient types of conception", + "purpose": "ConceptMap used for the translation and recording of concepts for patient types of conception. This is intended for the element Procedure.code", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", "targetUri": "http://snomed.info/sct?fhir_vs=isa/138875005", "group": [ diff --git a/ConceptMap/ConceptMap-Genomics-procedure-transfusiontype.json b/ConceptMap/ConceptMap-Genomics-procedure-transfusiontype.json index 165dd9e..6bfb2e6 100644 --- a/ConceptMap/ConceptMap-Genomics-procedure-transfusiontype.json +++ b/ConceptMap/ConceptMap-Genomics-procedure-transfusiontype.json @@ -1,7 +1,7 @@ { "resourceType": "ConceptMap", "id": "genomics-procedure-transfusiontype", - "url": "https://fhir.nhs.uk/Conceptmap/genomics-procedure-transfusiontype", + "url": "https://fhir.nhs.uk/ConceptMap/genomics-procedure-transfusiontype", "version": "0.1.0", "name": "GenomicsProcedureTransfusionType", "title": "Genomics Procedure Transfusion Type", diff --git a/ConceptMap/ConceptMap-Genomics-reportdeliverymethod.json b/ConceptMap/ConceptMap-Genomics-reportdeliverymethod.json index 1c05864..dc0a51f 100644 --- a/ConceptMap/ConceptMap-Genomics-reportdeliverymethod.json +++ b/ConceptMap/ConceptMap-Genomics-reportdeliverymethod.json @@ -20,7 +20,7 @@ } ], "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", - "purpose": "ConceptMap used for the translation and recording of Genomics report delivery options, i.e., PractitionerRole.telecom.value", + "purpose": "ConceptMap used for the translation and recording of Genomics report delivery options. This is intended for the element PractitionerRole.telecom.value. The preferred delivery method will be indicated by rank=1 for the associated ContactPoint", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", "targetUri": "http://hl7.org/fhir/ValueSet/contact-point-system", "group": [ @@ -31,7 +31,8 @@ "display": "POSTAL", "target": [ { - "equivalence": "unmatched" + "equivalence": "unmatched", + "comment": "The postal address will be captured under PractitionerRole.organization (retrieved from ODS)" } ] }, diff --git a/ConceptMap/ConceptMap-Genomics-specimen-final-sample.json b/ConceptMap/ConceptMap-Genomics-specimen-final-sample.json index 2eca622..11760f9 100644 --- a/ConceptMap/ConceptMap-Genomics-specimen-final-sample.json +++ b/ConceptMap/ConceptMap-Genomics-specimen-final-sample.json @@ -22,7 +22,6 @@ "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", "purpose": "ConceptMap used for the translation and recording of concepts for the categories of final sample types.This is intended for the element Specimen.type", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", "group": [ { "target": "http://snomed.info/sct", diff --git a/ConceptMap/ConceptMap-Genomics-typeof-transplantprocedure.json b/ConceptMap/ConceptMap-Genomics-typeof-transplantprocedure.json index 1dc7505..366222b 100644 --- a/ConceptMap/ConceptMap-Genomics-typeof-transplantprocedure.json +++ b/ConceptMap/ConceptMap-Genomics-typeof-transplantprocedure.json @@ -1,7 +1,7 @@ { "resourceType": "ConceptMap", "id": "genomics-typeof-transplantprocedure", - "url": "https://fhir.nhs.uk/Conceptmap/genomics-typeof-transplantprocedure", + "url": "https://fhir.nhs.uk/ConceptMap/genomics-typeof-transplantprocedure", "name": "GenomicsTypeofTransplantProcedure", "title": "Genomics Type of Transplant Procedure", "version": "0.0.1", @@ -22,7 +22,6 @@ "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", "purpose": "ConceptMap used for the translation and recording concepts for transplantation procedure. This is intended for the element Procedure.code", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", "group": [ { "target": "http://snomed.info/sct", From 4fd99adceb82e0b12a6f82da7822f04d854f9054 Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Thu, 12 Sep 2024 10:46:48 +0100 Subject: [PATCH 2/2] Update ConceptMap-Genomics-specimen-tumourcellularity.json Update the mapping for ConceptMap-Genomics-specimen-tumourcellularity. --- ConceptMap/ConceptMap-Genomics-specimen-tumourcellularity.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ConceptMap/ConceptMap-Genomics-specimen-tumourcellularity.json b/ConceptMap/ConceptMap-Genomics-specimen-tumourcellularity.json index e79c843..bb38186 100644 --- a/ConceptMap/ConceptMap-Genomics-specimen-tumourcellularity.json +++ b/ConceptMap/ConceptMap-Genomics-specimen-tumourcellularity.json @@ -20,7 +20,7 @@ } ], "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", - "purpose": "ConceptMap used for the translation and recording of concepts for the element Observation.code", + "purpose": "ConceptMap used for the translation and recording of concepts for the proportion of tumour cellularity. This is intended for the element Observation.component.valueCodeableConcept.", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", "targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C!%20362981000%20", "group": [