From 559b087780e9d9636d995ff3e7c3c27e17d3e87c Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Fri, 31 May 2024 16:48:51 +0100 Subject: [PATCH 1/5] Create CodeSystems AdditionalInfoTypeGenomics Create CodeSystems AdditionalInfoTypeGenomics, ValueSet, map to SD-Task --- ...odeSystem-Genomics-AdditionalInfoType.json | 53 +++++++++++++++++++ ...tal-Task-Genomics.StructureDefinition.json | 16 ++++++ .../ValueSet-Genomics-AdditionalInfoType.json | 30 +++++++++++ 3 files changed, 99 insertions(+) create mode 100644 CodeSystem/CodeSystem-Genomics-AdditionalInfoType.json create mode 100644 ValueSet/ValueSet-Genomics-AdditionalInfoType.json diff --git a/CodeSystem/CodeSystem-Genomics-AdditionalInfoType.json b/CodeSystem/CodeSystem-Genomics-AdditionalInfoType.json new file mode 100644 index 0000000..2da8147 --- /dev/null +++ b/CodeSystem/CodeSystem-Genomics-AdditionalInfoType.json @@ -0,0 +1,53 @@ +{ + "resourceType": "CodeSystem", + "id": "AdditionalInfoTypeGenomics", + "url": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "version": "0.1.0", + "name": "AdditionalInfoTypeGenomics", + "title": "Additional Information Type Genomics", + "status": "draft", + "date": "2024-05-31T00:00:00.000Z", + "publisher": "NHS England", + "contact": [ + { + "name": "NHS England", + "telecom": [ + { + "system": "email", + "value": "interoperabilityteam@nhs.net" + } + ] + } + ], + "description": "CodeSystem to specify reference to additional details of the input's use as part of the task execution or the output generated from task completion.", + "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", + "caseSensitive": true, + "content": "complete", + "concept": [ + { + "code": "ConsignmentNumber", + "display": "Consignment Number", + "definition": "The specimen consignment number" + }, + { + "code": "RackNumber", + "display": "Rack Number", + "definition": "The specimen rack number" + }, + { + "code": "WellIdNum", + "display": "Well Identification Number", + "definition": "The specimen well identification number" + }, + { + "code": "Specimen", + "display": "Specimen", + "definition": "The specimen provided for the Task execution" + }, + { + "code": "DiagnosticReport", + "display": "DiagnosticReport", + "definition": "The DiagnosticReport generated upon the Task completion" + } + ] +} \ No newline at end of file diff --git a/StructureDefinition/NHSDigital-Task-Genomics.StructureDefinition.json b/StructureDefinition/NHSDigital-Task-Genomics.StructureDefinition.json index c4812b8..6b0df19 100644 --- a/StructureDefinition/NHSDigital-Task-Genomics.StructureDefinition.json +++ b/StructureDefinition/NHSDigital-Task-Genomics.StructureDefinition.json @@ -154,6 +154,22 @@ ] } ] + }, + { + "id": "Task.input.type.coding", + "path": "Task.input.type.coding", + "binding": { + "strength": "preferred", + "valueSet": "https://fhir.nhs.uk/ValueSet/AdditionalInfoTypeGenomics" + } + }, + { + "id": "Task.output.type.coding", + "path": "Task.output.type.coding", + "binding": { + "strength": "preferred", + "valueSet": "https://fhir.nhs.uk/ValueSet/AdditionalInfoTypeGenomics" + } } ] } diff --git a/ValueSet/ValueSet-Genomics-AdditionalInfoType.json b/ValueSet/ValueSet-Genomics-AdditionalInfoType.json new file mode 100644 index 0000000..c8c75f5 --- /dev/null +++ b/ValueSet/ValueSet-Genomics-AdditionalInfoType.json @@ -0,0 +1,30 @@ +{ + "resourceType": "ValueSet", + "url": "https://fhir.nhs.uk/ValueSet/AdditionalInfoTypeGenomics", + "version": "0.1.0", + "name": "AdditionalInfoTypeGenomics", + "title": "Additional Information Type Genomics", + "status": "draft", + "date": "2024-05-31T00:00:00.000Z", + "publisher": "NHS England", + "contact": [ + { + "name": "NHS England", + "telecom": [ + { + "system": "email", + "value": "interoperabilityteam@nhs.net" + } + ] + } + ], "description": "ValueSet to specify reference to additional details of the input`s use as part of the task execution or the output generated from task completion.", + "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\\\\\"License\\\\\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\\\\\"AS IS\\\\\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", + "compose": { + "include": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "version": "0.1.0" + } + ] + } +} \ No newline at end of file From 42faea6307cf655182c3384a38c9f4b1523fab0e Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Mon, 3 Jun 2024 11:49:05 +0100 Subject: [PATCH 2/5] Update to Examples using CodeSystem-Genomics-AdditionalInfoType Update to Examples referencing CodeSystem-Genomics-AdditionalInfoType --- ...odeSystem-Genomics-AdditionalInfoType.json | 25 ++++++++------ ...rderAccepted-SufficientSample-Example.json | 6 ++-- ...tOrderCompleted-CascadeTestingExample.json | 6 ++-- ...stOrderCompleted-FollowupTest-Example.json | 6 ++-- ...erForwareded-CancerSolidTumor-Example.json | 4 +-- ...erRejected-InsufficientSample-Example.json | 8 ++--- ...ormAccepted-UsingStoredSample-Example.json | 6 ++-- ...ormAccepted-StorageOfMaterial-Example.json | 6 ++-- ...TestOrderAccepted-DirectToLab-Example.json | 26 +++++++------- ...erAccepted-TrioTestingProband-Example.json | 34 +++++++++---------- ...estOrderCompleted-DirectToLab-Example.json | 6 ++-- ...rCompleted-TrioTestingProband-Example.json | 6 ++-- ...RareDiseaseTestOrderForwarded-Example.json | 4 +-- 13 files changed, 74 insertions(+), 69 deletions(-) diff --git a/CodeSystem/CodeSystem-Genomics-AdditionalInfoType.json b/CodeSystem/CodeSystem-Genomics-AdditionalInfoType.json index 2da8147..8c0186f 100644 --- a/CodeSystem/CodeSystem-Genomics-AdditionalInfoType.json +++ b/CodeSystem/CodeSystem-Genomics-AdditionalInfoType.json @@ -24,30 +24,35 @@ "caseSensitive": true, "content": "complete", "concept": [ + { + "code": "Consent", + "display": "Consent", + "definition": "Consent for treatment record" + }, { "code": "ConsignmentNumber", "display": "Consignment Number", "definition": "The specimen consignment number" }, { - "code": "RackNumber", - "display": "Rack Number", - "definition": "The specimen rack number" + "code": "DiagnosticReport", + "display": "DiagnosticReport", + "definition": "The DiagnosticReport generated upon the task completion" }, { - "code": "WellIdNum", - "display": "Well Identification Number", - "definition": "The specimen well identification number" + "code": "RackId", + "display": "Rack Number", + "definition": "The specimen rack number" }, { "code": "Specimen", "display": "Specimen", - "definition": "The specimen provided for the Task execution" + "definition": "The specimen provided for the task execution" }, { - "code": "DiagnosticReport", - "display": "DiagnosticReport", - "definition": "The DiagnosticReport generated upon the Task completion" + "code": "WellId", + "display": "Well Identification Number", + "definition": "The specimen well identification number" } ] } \ No newline at end of file diff --git a/Task/Task-NonWGSRareDiseaseTestOrderAccepted-SufficientSample-Example.json b/Task/Task-NonWGSRareDiseaseTestOrderAccepted-SufficientSample-Example.json index b50229c..f6dc81b 100644 --- a/Task/Task-NonWGSRareDiseaseTestOrderAccepted-SufficientSample-Example.json +++ b/Task/Task-NonWGSRareDiseaseTestOrderAccepted-SufficientSample-Example.json @@ -52,10 +52,10 @@ "output": [ { "type": { - "coding": [ + "coding": [ { - "system": "http://snomed.info/sct", - "code": "123038009", + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Specimen", "display": "Specimen" } ] diff --git a/Task/Task-NonWGSRareDiseaseTestOrderCompleted-CascadeTestingExample.json b/Task/Task-NonWGSRareDiseaseTestOrderCompleted-CascadeTestingExample.json index 9a78aea..7898ded 100644 --- a/Task/Task-NonWGSRareDiseaseTestOrderCompleted-CascadeTestingExample.json +++ b/Task/Task-NonWGSRareDiseaseTestOrderCompleted-CascadeTestingExample.json @@ -45,9 +45,9 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "1054161000000101", - "display": "Genetic report (record artifact)" + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "DiagnosticReport", + "display": "DiagnosticReport" } ] }, diff --git a/Task/Task-NonWGSRareDiseaseTestOrderCompleted-FollowupTest-Example.json b/Task/Task-NonWGSRareDiseaseTestOrderCompleted-FollowupTest-Example.json index 63f58d4..75fcd30 100644 --- a/Task/Task-NonWGSRareDiseaseTestOrderCompleted-FollowupTest-Example.json +++ b/Task/Task-NonWGSRareDiseaseTestOrderCompleted-FollowupTest-Example.json @@ -45,9 +45,9 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "1054161000000101", - "display": "Genetic report (record artifact)" + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "DiagnosticReport", + "display": "DiagnosticReport" } ] }, diff --git a/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json b/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json index e60003b..30cd113 100644 --- a/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json +++ b/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json @@ -45,8 +45,8 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "123038009", + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Specimen", "display": "Specimen" } ] diff --git a/Task/Task-NonWGSRareDiseaseTestOrderRejected-InsufficientSample-Example.json b/Task/Task-NonWGSRareDiseaseTestOrderRejected-InsufficientSample-Example.json index 58f0e4b..f4c64a4 100644 --- a/Task/Task-NonWGSRareDiseaseTestOrderRejected-InsufficientSample-Example.json +++ b/Task/Task-NonWGSRareDiseaseTestOrderRejected-InsufficientSample-Example.json @@ -49,13 +49,13 @@ "text": "Please provide additional sample of X" } ], - "output": [ + "output": [ { "type": { - "coding": [ + "coding": [ { - "system": "http://snomed.info/sct", - "code": "123038009", + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Specimen", "display": "Specimen" } ] diff --git a/Task/Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example.json b/Task/Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example.json index 888dd40..069e28c 100644 --- a/Task/Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example.json +++ b/Task/Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example.json @@ -44,9 +44,9 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "445295009", - "display": "Blood specimen with EDTA" + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Specimen", + "display": "Specimen" } ] }, diff --git a/Task/Task-TestOrderFormAccepted-StorageOfMaterial-Example.json b/Task/Task-TestOrderFormAccepted-StorageOfMaterial-Example.json index 1ebb90d..74bd850 100644 --- a/Task/Task-TestOrderFormAccepted-StorageOfMaterial-Example.json +++ b/Task/Task-TestOrderFormAccepted-StorageOfMaterial-Example.json @@ -45,9 +45,9 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "445295009", - "display": "Blood specimen with EDTA" + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Specimen", + "display": "Specimen" } ] }, diff --git a/Task/Task-WGSRareDiseaseTestOrderAccepted-DirectToLab-Example.json b/Task/Task-WGSRareDiseaseTestOrderAccepted-DirectToLab-Example.json index a4df264..8819108 100644 --- a/Task/Task-WGSRareDiseaseTestOrderAccepted-DirectToLab-Example.json +++ b/Task/Task-WGSRareDiseaseTestOrderAccepted-DirectToLab-Example.json @@ -2,22 +2,22 @@ "resourceType": "Task", "id": "Task-WGSRareDiseaseTestOrderAccepted-DirectToLab-Example", "status": "accepted", - "statusReason": { + "statusReason": { "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics", - "code": "SpecimenReceived", + { + "system": "https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics", + "code": "SpecimenReceived", "display": "Specimen Received" } ] }, "intent": "order", "priority": "urgent", - "code": { + "code": { "coding": [ - { - "system": "https://fhir.nhs.uk/CodeSystem/task-code-genomics", - "code": "RequestSampleAlignment", + { + "system": "https://fhir.nhs.uk/CodeSystem/task-code-genomics", + "code": "RequestSampleAlignment", "display": "Request & Sample Alignment" } ] @@ -33,7 +33,7 @@ } }, "authoredOn": "2023-10-01T15:00:00Z", - "lastModified":"2023-10-10T16:00:00Z", + "lastModified": "2023-10-10T16:00:00Z", "requester": { "reference": "PractitionerRole/PractitionerRole-EugeneSmith-Example" }, @@ -47,10 +47,10 @@ "output": [ { "type": { - "coding": [ + "coding": [ { - "system": "http://snomed.info/sct", - "code": "123038009", + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Specimen", "display": "Specimen" } ] @@ -60,4 +60,4 @@ } } ] -} +} \ No newline at end of file diff --git a/Task/Task-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example.json b/Task/Task-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example.json index c4ef936..aa9cc4a 100644 --- a/Task/Task-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example.json +++ b/Task/Task-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example.json @@ -54,9 +54,9 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "445295009", - "display": "Blood specimen with EDTA" + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Specimen", + "display": "Specimen" } ] }, @@ -68,9 +68,9 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "445295009", - "display": "Blood specimen with EDTA" + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Specimen", + "display": "Specimen" } ] }, @@ -82,9 +82,9 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "445295009", - "display": "Blood specimen with EDTA" + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Specimen", + "display": "Specimen" } ] }, @@ -96,9 +96,9 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "886971000000109", - "display": "Consent for treatment record" + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Consent", + "display": "Consent" } ] }, @@ -110,9 +110,9 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "886971000000109", - "display": "Consent for treatment record" + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Consent", + "display": "Consent" } ] }, @@ -125,8 +125,8 @@ "coding": [ { "system": "http://snomed.info/sct", - "code": "886971000000109", - "display": "Consent for treatment record" + "code": "Consent", + "display": "Consent" } ] }, diff --git a/Task/Task-WGSRareDiseaseTestOrderCompleted-DirectToLab-Example.json b/Task/Task-WGSRareDiseaseTestOrderCompleted-DirectToLab-Example.json index c098de1..fc1f1b9 100644 --- a/Task/Task-WGSRareDiseaseTestOrderCompleted-DirectToLab-Example.json +++ b/Task/Task-WGSRareDiseaseTestOrderCompleted-DirectToLab-Example.json @@ -45,9 +45,9 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "1054161000000101", - "display": "Genetic report (record artifact)" + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "DiagnosticReport", + "display": "DiagnosticReport" } ] }, diff --git a/Task/Task-WGSRareDiseaseTestOrderCompleted-TrioTestingProband-Example.json b/Task/Task-WGSRareDiseaseTestOrderCompleted-TrioTestingProband-Example.json index 21d08c4..1b3ccb0 100644 --- a/Task/Task-WGSRareDiseaseTestOrderCompleted-TrioTestingProband-Example.json +++ b/Task/Task-WGSRareDiseaseTestOrderCompleted-TrioTestingProband-Example.json @@ -45,9 +45,9 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "1054161000000101", - "display": "Genetic report (record artifact)" + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "DiagnosticReport", + "display": "DiagnosticReport" } ] }, diff --git a/Task/Task-WGSRareDiseaseTestOrderForwarded-Example.json b/Task/Task-WGSRareDiseaseTestOrderForwarded-Example.json index d5758da..2670fb5 100644 --- a/Task/Task-WGSRareDiseaseTestOrderForwarded-Example.json +++ b/Task/Task-WGSRareDiseaseTestOrderForwarded-Example.json @@ -49,8 +49,8 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", - "code": "123038009", + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "Specimen", "display": "Specimen" } ] From 399c094cd1f47fd2c12ab2a0c370a94897e2f6fe Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Mon, 3 Jun 2024 11:55:28 +0100 Subject: [PATCH 3/5] Update ask-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example Update ask-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example -Add correct C-URL to replace snomed --- ...RareDiseaseTestOrderAccepted-TrioTestingProband-Example.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Task/Task-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example.json b/Task/Task-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example.json index aa9cc4a..6a55eec 100644 --- a/Task/Task-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example.json +++ b/Task/Task-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example.json @@ -124,7 +124,7 @@ "type": { "coding": [ { - "system": "http://snomed.info/sct", + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", "code": "Consent", "display": "Consent" } From 75888118a235b722ea0bf672cdbd4c5e57f5bff0 Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Mon, 3 Jun 2024 17:04:35 +0100 Subject: [PATCH 4/5] Create to consignment Num, RackId & WellId in Examples --- ...oodEDTA-WithCollectoinDetails-Example.json | 2 +- ...rderAccepted-SufficientSample-Example.json | 17 ++++++++++++++ ...erForwareded-CancerSolidTumor-Example.json | 1 + ...erRejected-InsufficientSample-Example.json | 23 +++++++++++++++++++ ...ormAccepted-UsingStoredSample-Example.json | 23 +++++++++++++++++++ 5 files changed, 65 insertions(+), 1 deletion(-) diff --git a/Specimen/Specimen-BloodEDTA-WithCollectoinDetails-Example.json b/Specimen/Specimen-BloodEDTA-WithCollectoinDetails-Example.json index 9737207..8c984d0 100644 --- a/Specimen/Specimen-BloodEDTA-WithCollectoinDetails-Example.json +++ b/Specimen/Specimen-BloodEDTA-WithCollectoinDetails-Example.json @@ -3,7 +3,7 @@ "id": "Specimen-BloodEDTA-WithCollectoinDetails-Example", "identifier": [ { - "system": "https://fhir.leedsth.nhs.uk//Id/specimenId", + "system": "https://fhir.leedsth.nhs.uk/Id/specimenId", "value": "RR8-696B0-17843" } ], diff --git a/Task/Task-NonWGSRareDiseaseTestOrderAccepted-SufficientSample-Example.json b/Task/Task-NonWGSRareDiseaseTestOrderAccepted-SufficientSample-Example.json index f6dc81b..b58f6a9 100644 --- a/Task/Task-NonWGSRareDiseaseTestOrderAccepted-SufficientSample-Example.json +++ b/Task/Task-NonWGSRareDiseaseTestOrderAccepted-SufficientSample-Example.json @@ -49,6 +49,23 @@ "text": "Optional Free Text field to record any additional details" } ], + "input": [ + { + "type": { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "ConsignmentNumber", + "display": "Consignment Number" + } + ] + }, + "valueIdentifier": { + "system": "https://www.royalmail.com/track-your-item#/", + "value": "HZ970705811GB" + } + } + ], "output": [ { "type": { diff --git a/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json b/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json index 30cd113..2f01964 100644 --- a/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json +++ b/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json @@ -40,6 +40,7 @@ "text": "Free to capture additional comments" } ], + "input": [ { "type": { diff --git a/Task/Task-NonWGSRareDiseaseTestOrderRejected-InsufficientSample-Example.json b/Task/Task-NonWGSRareDiseaseTestOrderRejected-InsufficientSample-Example.json index f4c64a4..755099c 100644 --- a/Task/Task-NonWGSRareDiseaseTestOrderRejected-InsufficientSample-Example.json +++ b/Task/Task-NonWGSRareDiseaseTestOrderRejected-InsufficientSample-Example.json @@ -49,6 +49,29 @@ "text": "Please provide additional sample of X" } ], + "input": [ + { + "type": { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "RackId", + "display": "Rack Number" + } + ] + }, + "valueIdentifier": { + "system": "https://www.guysandstthomas.nhs.uk/RackId", + "value": "RJ1-RAX01-9449307555", + "assigner": { + "identifier": { + "system": "https://fhir.nhs.uk/Id/ods-organization-code", + "value": "RJ1" + } + } + } + } + ], "output": [ { "type": { diff --git a/Task/Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example.json b/Task/Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example.json index 069e28c..d74eb9c 100644 --- a/Task/Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example.json +++ b/Task/Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example.json @@ -39,6 +39,29 @@ "text": "Test critieria met and sample to be used from storage" } ], + "input": [ + { + "type": { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", + "code": "WellId", + "display": "Well Identification Number" + } + ] + }, + "valueIdentifier": { + "system": "https://www.guysandstthomas.nhs.uk/WellId", + "value": "RJ1-WID-9449307555", + "assigner": { + "identifier": { + "system": "https://fhir.nhs.uk/Id/ods-organization-code", + "value": "RJ1" + } + } + } + } + ], "output": [ { "type": { From 7129cbcafedb7a09ab2fe9edd3dfd997b26e19d8 Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Wed, 5 Jun 2024 15:14:04 +0100 Subject: [PATCH 5/5] Remove White Space ask-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example --- ...eDiseaseTestOrderForwareded-CancerSolidTumor-Example.json | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json b/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json index 2f01964..306967a 100644 --- a/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json +++ b/Task/Task-NonWGSRareDiseaseTestOrderForwareded-CancerSolidTumor-Example.json @@ -40,11 +40,10 @@ "text": "Free to capture additional comments" } ], - - "input": [ + "input": [ { "type": { - "coding": [ + "coding": [ { "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics", "code": "Specimen",