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chore: Upgrade Python requirements - #305

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@edx-requirements-bot

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Python requirements update. Please review the changelogs for the upgraded packages.

Deleted obsolete pull_requests:
#304

@edx-requirements-bot

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List of packages in the PR without any issue.

  • coverage changes from 7.16.1 to 7.16.2
  • flake8 changes from 7.3.0 to 7.4.1
  • mako changes from 1.4.1 to 1.4.3
  • platformdirs changes from 4.11.9 to 4.12.0
  • pycodestyle changes from 2.14.0 to 2.15.0
  • pymongo changes from 4.18.1 to 4.18.2
  • pyproject-api changes from 1.11.1 to 1.11.2
  • python-discovery changes from 1.6.0 to 1.6.1
  • pytz changes from 2026.3.post1 to 2026.4
  • tox changes from 4.61.5 to 4.64.4
  • uv changes from 0.12.15 to 0.12.19
  • virtualenv changes from 21.7.10 to 21.13.0

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These Packages need manual review..

  • [MAJOR] filelock changes from 3.32.7 to 4.0.4
  • [MAJOR] pyflakes changes from 3.4.0 to 4.0.0

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