Core Quantitative Genetic

code for single- and multi-trait genetic analysis (variance decomposition and GWAS) with DGE and IGE

in code/

1. VD/ scripts to run variance decomposition analysis or null covariance matrix for LOCO GWAS
   
2. afterVD/ scripts to parse output of VD - and save results as R object
   
3. preVD/ scripts to prepare simulations to analyse with VD
   

in nf-realdata/

Nextflow pipeline to run variance decomposition analysis

in nf-simulations/

Nextflow pipeline to run simlulations and then variance decomposition analysis

NB: Figures related to analysis of CFW and HS mice published in Tonnelé et al. 2026 can be found here