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Use sensitive=True for ntLink mappings #113

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Merged
lcoombe merged 1 commit into from
Jan 3, 2023
Merged

Use sensitive=True for ntLink mappings #113

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2 changes: 1 addition & 1 deletion bin/tigmint-ntlink-map
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ import subprocess
def run_ntlink_pair(args):
"Run ntLink pair stage to obtain PAF-formatted mappings"
command = f"ntLink pair target={args.target}.fa reads={args.reads} " \
f"paf=True k={args.k} w={args.w} t={args.t}"
f"paf=True k={args.k} w={args.w} t={args.t} sensitive=True"
command_shlex = shlex.split(command)
return_code = subprocess.call(command_shlex)
assert return_code == 0
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