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Include bioscrape in CI tests?

Status: Open.

#341 In BuildACell/BioCRNPyler;

· murrayrm opened on Aug 21, 2026

Decide how to handle examples

Status: Open.

#339 In BuildACell/BioCRNPyler;

· murrayrm opened on Aug 21, 2026

Allow lists of multiple substrates for Membrane Components (i.e. Transport)

Status: Open.

Feature

#338 In BuildACell/BioCRNPyler;

· zjurado opened on Aug 14, 2026

Bug: ODEint fails with "Repeated convergence failures" when using EnergyTXTL

Status: Open.

Bug

#337 In BuildACell/BioCRNPyler;

· zjurado opened on Aug 14, 2026

Use consistent naming conventions for classes

Status: Open.

#333 In BuildACell/BioCRNPyler;

· murrayrm opened on Jul 30, 2026

Improve default parameter values using publicly-accessible datasets

Status: Open.

#332 In BuildACell/BioCRNPyler;

· murrayrm opened on Jul 9, 2026

Add parameter identification examples into the BioCRNpyler documentation

Status: Open.

#331 In BuildACell/BioCRNPyler;

· murrayrm opened on Jul 9, 2026

Improve support for parameter identification

Status: Open.

#330 In BuildACell/BioCRNPyler;

· murrayrm opened on Jul 9, 2026

Allow mixtures to be combined

Status: Open.

#329 In BuildACell/BioCRNPyler;

· murrayrm opened on Jul 9, 2026

Implement toehold-mediated strand exchange (TMSE) circuits as a "companion module"

Status: Open.

#328 In BuildACell/BioCRNPyler;

· murrayrm opened on Jul 9, 2026

Implement osmolarity property

Status: Open.

#327 In BuildACell/BioCRNPyler;

· murrayrm opened on Jul 9, 2026

Implement lysis mechanism

Status: Open.

#326 In BuildACell/BioCRNPyler;

· murrayrm opened on Jul 9, 2026