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Beast3
- #14
#14
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walterxie
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Aug 4, 2026
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Beast3
#14
walterxie
merged 14 commits into
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Commits
Commits on Jul 24, 2026
KRegCCD: fast exact N_2 reserve via meet-in-the-middle + allocation-free matcher
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KRegCCD: sum-arithmetic complement lookup + shared N_1/N_2 pair pass
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KRegCCD: fast entropy blue-region pass (sum-arithmetic boundary enumeration)
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KRegCCD: fast N_1-only reserve (reserve depth k=1)
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KRegCCD: parallelise getEntropyRecursive across size levels
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Commits on Jul 29, 2026
point estimate experiment
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Commits on Aug 3, 2026
KRegCCD: parallelise the reserve solve behind getMAPTree, and sampling
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Add SubtreeMarginal: induced-subtree distribution comparison tool
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delete local experiments
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KRegCCD change default mu to 0.005
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Commits on Aug 4, 2026
SubtreeMarginal: skip the model work when the posterior has no topological uncertainty
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upgrade publish plugin ref to bug CompEvol/beast3#117
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upgrade CI plugin version to avoid bug
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CCD depends on BEAST.app
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