docs: Log level documentation on remaining package by arng40 · Pull Request #3494 · GEOS-DEV/GEOS

arng40 · 2024-12-17T14:30:20Z

This PR follow #3230 and aim to document all log level remaining in GEOS

Extends the new log level documentation to all GEOS :

Remove old GEOS_LOG_LEVEL macro located in Logger.hpp
Centralize the documentation of log level ( aka LogLevelInfos.hpp ) under each package ( folder directly under coreCompenent/ )

…level-doc-package

…t' into feature/dudes/log-level-doc-package

…level-doc-package

CusiniM · 2025-03-02T23:53:18Z

+
+/**
+ * @file LogLevelsInfo.hpp
+ * This file contains common log level informations for physics solvers


Suggested change

* This file contains common log level informations for physics solvers

* This file contains common log level informations for physics solvers

this does not seem to be for physics solvers but for constitutive models

yes and there are some of these at other location

CusiniM · 2025-03-03T00:00:03Z

  {
-    GEOS_LOG_LEVEL_RANK_0( 1, "Modeling linear DAS data is activated" );
-    GEOS_LOG_LEVEL_RANK_0( 1, GEOS_FMT( "Linear DAS formulation: {}", m_useDAS == WaveSolverUtils::DASType::strainIntegration ? "strain integration" : "displacement difference" ) );
+    GEOS_LOG_LEVEL_RANK_0( logInfo::DASType, "Modeling linear DAS data is activated" );


How is this working since you seem to have deleted this Macro?

nevermind, I found the new one. I don't know why the search is not working properly.

CusiniM · 2025-03-03T00:05:43Z

I don't understand this move...

Which move are you talking about ? I don't get it

…level-doc-package

codecov · 2025-03-10T11:02:06Z

Codecov Report

Attention: Patch coverage is 57.91367% with 234 lines in your changes missing coverage. Please review.

Project coverage is 56.28%. Comparing base (7000da0) to head (38bdeef).
Report is 55 commits behind head on develop.

Files with missing lines	Patch %	Lines
...csSolvers/fluidFlow/CompositionalMultiphaseFVM.cpp	25.00%	18 Missing ⚠️
...sicsSolvers/surfaceGeneration/SurfaceGenerator.cpp	0.00%	18 Missing ⚠️
...rs/fluidFlow/wells/CompositionalMultiphaseWell.cpp	53.12%	15 Missing ⚠️
...oreComponents/physicsSolvers/PhysicsSolverBase.cpp	72.50%	11 Missing ⚠️
...tiveDrivers/relativePermeability/RelpermDriver.cpp	0.00%	10 Missing ⚠️
...sSolvers/fluidFlow/CompositionalMultiphaseBase.cpp	52.38%	10 Missing ⚠️
...olvers/solidMechanics/SolidMechanicsStatistics.cpp	0.00%	9 Missing ⚠️
...rc/coreComponents/physicsSolvers/LogLevelsInfo.hpp	66.66%	8 Missing ⚠️
...hysicsSolvers/multiphysics/HydrofractureSolver.cpp	0.00%	8 Missing ⚠️
...s/fluidFlow/ReactiveCompositionalMultiphaseOBL.cpp	12.50%	7 Missing ⚠️
... and 40 more

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #3494      +/-   ##
===========================================
+ Coverage    56.26%   56.28%   +0.02%     
===========================================
  Files         1182     1188       +6     
  Lines       102999   103079      +80     
===========================================
+ Hits         57951    58021      +70     
- Misses       45048    45058      +10

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…level-doc-package

commit 9653609 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 14:10:26 2025 +0100 🐛 ✅ finalized the fix for when the reference row has merged cell : removed the reference-row concept in favor of a columns-width array commit 158485e Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 14:07:48 2025 +0100 🧪 added failing test for the side case when the reference row has merged cell(s) commit 8b425a9 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 14:05:09 2025 +0100 🐛 ✅ finalized the fix for the side-case bug (when only one merged line) + correct unit test commit 3d71945 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 12:05:38 2025 +0100 🐛 🚧 fix two side-case bugs + docs on a bug to fix/warn later commit 8ff38d3 Merge: aea705c 5732c5c Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 10:19:40 2025 +0100 Merge commit '5732c5c0be16ead0b846c302ed06d30988da4a9f' into bugfix/rey/csv-export-fail commit aea705c Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 10:11:05 2025 +0100 🦺 rebaseline commit 5732c5c Author: Frank Fei <frankfei0929@gmail.com> Date: Thu Mar 20 18:23:52 2025 -0700 feat: phase-field nucleation modeling of hydraulic fracturing (#2125) * add constitutive files for the phase-field nucleation formulation * add constitutive files for the phase-field nucleation formulation * modify the pf formulation by adding an external driving force * add a member variable for the external driving force and a member function to output it * add the new constitutive for pf nucleation into the passthru * Add DamageExtDrivingForce files into CMakeLists * solve the segmentation error * Add an input file for the phase-field nucleation formulation * correct the calculation of the external driving force * adding TableFunction files for the surfing boundary condition * adding an option variable for the external driving force term * adding the initial fracture and surfing boundary condition * set upper and lower bounds of the damage when calculating the degradation function * correct the typo in the formulation * set a threshold for the strain energy based on c_e to keep the damage value non-negative * clean the phase-field code and add the external driving force term into the Damage base code * Add a switch of the external driving force to check if the nucleation formulation is called * clean the phase-field code by merging the nucleation formulation into the damage base code * create the input file and mesh for the three point test * add new mesh files for the 3 points loading test * change the upper limit of d to 1 in the degradation function * add the input file for the test to calibrate modeling parameters * add an input file for the wellbore problem * fixed changes in schema and .rst files for nucleation formulation * remove unnecessary function for specifying the nodal value * fixed the linear solver parameters and changed the material parameters to cement * added a small tolerance in the degradation such that it has a small residual when d = 1 * modified the upper threshold of d * added a nodal scale array to calculate the traction magnitude * added a damageUpperBound variable to indicate the upper limit of the phase-field * renamed the flag to add the external driving force for the nucleation model * changed the default value of upper bound * removed the function to apply damage on traction B.C. * reset the default value of the upper bound of damage * added a lower limit parameter for the degradation * added a damage upper bound constraint * changed the parameter for the smoke file * removed the unnecessary changes in TractionBoundaryCondition * added discretization for surface generator in parameter file and changed MeshTargets loop. * added a flag to indicate whether to apply the nodal damage irreversibility constraint * made the signs consistent when assembling the system * added the flag to indicate the crack irreversibility constraint * removed the discretization in surface generator parameters * rebaselined for the phasefield_nucleation_formulation * added checks of input parameters if the extDrivingForceFlag is turned on * added lapack routines and functions to compute least squares solutions * added the function to update pressure gradient in a cell * added a phase-field poromechanics solver * modified Damage model for pressurized fracture * added new variables into spectral and vol-dev damage models * added a porous solid model for damage model * added new PhaseFieldPoromechancisSolver into CmakeLists * changed damage variable name according to the Damage model * added a poromechanics damage kernel for assembly of solid mechanics and flow equation. * added the permeability model for damaged materials * added a fracture injection example * added pressure effect term in the damage equation * added the input file for the wellbore problem * temporarily turned off chechSystemSolution * applied damage on surface traction * added an input file for the wellbore concrete specimen * added a wellbore example for the solid phase-field nucleation solver * updated the schema and docs for the new solver and models * modified parameter in damage permeability * changed the scale ont he degraded traction * added the pressurized damage kernel * added the function to apply the degradation on traction B.C. * moved pressureGradient and its update function to SinglePhaseBase * refactored the damage kernel and PorousDamageSolid for singlePhasePoromechanics * updated total stress calculation in the phase-field poromechancis solve * modified phaseFieldPoromechanics to fit in the template of coupledSolver * compiled with the new phaseFieldPoromechanics solver * removed unnecessary pressure gradient update * change the imposed damage to 1 for irreversibility * changed the fracture pressure term to pressure_n * modified injection case xml * corrected the string array type * to model pressurized crack * changed the linear solver for the damage solver * added fields of certain parameters to allow for random distribution * added field variables for compressive strength and delat coefficient * made SinglePhasePoromechanicsDamage a derivative of SinglePhasePoromechanics kernel and updated copyright content * made the damage dependent constant an input parameter * removed pressurized damage kernel for nonporous impermeable solid in this branch * modified xmls and added a smoke test * added SinglePhasePoromechanics_impl.hpp to the instantiation of SinglePhasePoromechanicsDamage --------- commit ccc9eac Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 18:04:09 2025 +0100 🐛 forgot a side case (when we have no data) commit 6bb553c Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 17:49:17 2025 +0100 🎨 uncrustify + better suggestion commit 9a7f8be Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 17:48:55 2025 +0100 🎨 uncrustify + better suggestion commit 1dfb5d2 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:51:54 2025 +0100 🐛 fix compilation by using the right macro commit 08bd71b Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:49:19 2025 +0100 🐛 fix compilation by removing a unused var, and actually use another one. commit 6cd6a20 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:42:03 2025 +0100 🎨 uncrustify commit 3cd1826 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:30:07 2025 +0100 🦺 rebaseline commit 50e1739 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 15:53:04 2025 +0100 🎨 uncoupled title & header layout populating (we will later be able to insert other content in-between more easily) commit beda2bb Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 13:45:17 2025 +0100 📝 documenting test goal explanation commit c734b7b Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 11:47:34 2025 +0100 📝 adding a note for error management commit 0879433 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 10:31:38 2025 +0100 📦 schemaschemaschemaschemaschema commit a00f6bc Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 10:30:30 2025 +0100 🦺 rebaseline commit 743a89f Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 16:35:47 2025 +0100 🔧 support for std::filesystem for CUDA/GCC8.5 compilers commit 5db0b2e Merge: 8febff2 24eca07 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 16:23:59 2025 +0100 Merge remote-tracking branch 'origin/develop' into bugfix/rey/csv-export-fail commit 8febff2 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 15:30:58 2025 +0100 ✨ ✅ support table formatting without layout specification, add a unit-test for it commit 24eca07 Author: Dickson Kachuma <81433670+dkachuma@users.noreply.github.com> Date: Wed Mar 19 09:28:30 2025 -0500 feat: Soreide-Whitson equation of state (#3597) Co-authored-by: Omar Duran <omaryesiduran@gmail.com> commit 4b13f7b Author: Dickson Kachuma <81433670+dkachuma@users.noreply.github.com> Date: Wed Mar 19 09:28:06 2025 -0500 feat: Add precision field to PVTDriver (#3600) commit 8620c7b Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 11:17:44 2025 +0100 Merge remote-tracking branch 'origin/develop' into bugfix/rey/csv-export-fail commit 33fc3fc Author: Pavel Tomin <paveltomin@users.noreply.github.com> Date: Tue Mar 18 18:57:40 2025 -0400 build: remove large mem (#3590) commit 8d9ac9d Author: Dickson Kachuma <81433670+dkachuma@users.noreply.github.com> Date: Tue Mar 18 16:26:35 2025 -0500 refactor: Separate compositional fluid parameters from models (#3594) commit c988661 Author: Omar Duran <omaryesiduran@gmail.com> Date: Tue Mar 18 12:26:14 2025 -0700 ci: oduran/xml_validation (#3588) commit cfab6c8 Author: Arnaud DUDES <155963334+arng40@users.noreply.github.com> Date: Tue Mar 18 20:24:00 2025 +0100 docs: Log level documentation on remaining package (#3494) commit 96a9449 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 18 11:59:52 2025 +0100 🚧 added no-layout formatter (untested) commit c636a09 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 18 11:57:45 2025 +0100 📦 other schema commit a7f1771 Merge: e413bf2 7000da0 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 18 11:54:47 2025 +0100 Merge remote-tracking branch 'origin/develop' into bugfix/rey/csv-export-fail commit 7000da0 Author: Randolph Settgast <settgast1@llnl.gov> Date: Mon Mar 17 11:11:58 2025 -0700 remove some constructors/destructors in VEM implementation to avoid warnings (#3599)

commit e495521 Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon Mar 24 16:51:43 2025 +0100 🐛 ✅ 2 bug fixes: when parent column only is not visible (now hides children) + it is no longer possible to enter wrong visibility value commit 7972176 Merge: 9653609 3c4000e Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon Mar 24 15:47:14 2025 +0100 Merge remote-tracking branch 'origin/develop' into bugfix/rey/csv-export-fail commit 3c4000e Author: Pavel Tomin <paveltomin@users.noreply.github.com> Date: Sat Mar 22 08:35:57 2025 -0500 feat: make possible to use solid mechanics solver to perform poromechanics initialization (#3396) commit 2118b48 Author: Dickson Kachuma <81433670+dkachuma@users.noreply.github.com> Date: Fri Mar 21 17:53:47 2025 -0500 feat: Add a compositional Phillips brine density model (#3598) Co-authored-by: Omar Duran <omaryesiduran@gmail.com> commit 8863635 Author: Brian Han <han12@llnl.gov> Date: Fri Mar 21 11:53:52 2025 -0700 Fix links in spack docs; reword beginning section (#3550) Co-authored-by: Matteo Cusini <49037133+CusiniM@users.noreply.github.com> commit ab75c18 Author: Brian Han <han12@llnl.gov> Date: Fri Mar 21 09:22:21 2025 -0700 fix: CI style and docs checks (#3584) * Add host-config path so style and docs jobs can find deps * Capture return code of cmake configuration line in config-build.py instead of always returning success on cmake configure line call * Fix doyxgen errors - undo deleted getMeshTargets() comment * Rerun uncrustify --------- Co-authored-by: Matteo Cusini <49037133+CusiniM@users.noreply.github.com> commit 9653609 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 14:10:26 2025 +0100 🐛 ✅ finalized the fix for when the reference row has merged cell : removed the reference-row concept in favor of a columns-width array commit 158485e Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 14:07:48 2025 +0100 🧪 added failing test for the side case when the reference row has merged cell(s) commit 8b425a9 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 14:05:09 2025 +0100 🐛 ✅ finalized the fix for the side-case bug (when only one merged line) + correct unit test commit 3d71945 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 12:05:38 2025 +0100 🐛 🚧 fix two side-case bugs + docs on a bug to fix/warn later commit 8ff38d3 Merge: aea705c 5732c5c Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 10:19:40 2025 +0100 Merge commit '5732c5c0be16ead0b846c302ed06d30988da4a9f' into bugfix/rey/csv-export-fail commit aea705c Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 10:11:05 2025 +0100 🦺 rebaseline commit 5732c5c Author: Frank Fei <frankfei0929@gmail.com> Date: Thu Mar 20 18:23:52 2025 -0700 feat: phase-field nucleation modeling of hydraulic fracturing (#2125) * add constitutive files for the phase-field nucleation formulation * add constitutive files for the phase-field nucleation formulation * modify the pf formulation by adding an external driving force * add a member variable for the external driving force and a member function to output it * add the new constitutive for pf nucleation into the passthru * Add DamageExtDrivingForce files into CMakeLists * solve the segmentation error * Add an input file for the phase-field nucleation formulation * correct the calculation of the external driving force * adding TableFunction files for the surfing boundary condition * adding an option variable for the external driving force term * adding the initial fracture and surfing boundary condition * set upper and lower bounds of the damage when calculating the degradation function * correct the typo in the formulation * set a threshold for the strain energy based on c_e to keep the damage value non-negative * clean the phase-field code and add the external driving force term into the Damage base code * Add a switch of the external driving force to check if the nucleation formulation is called * clean the phase-field code by merging the nucleation formulation into the damage base code * create the input file and mesh for the three point test * add new mesh files for the 3 points loading test * change the upper limit of d to 1 in the degradation function * add the input file for the test to calibrate modeling parameters * add an input file for the wellbore problem * fixed changes in schema and .rst files for nucleation formulation * remove unnecessary function for specifying the nodal value * fixed the linear solver parameters and changed the material parameters to cement * added a small tolerance in the degradation such that it has a small residual when d = 1 * modified the upper threshold of d * added a nodal scale array to calculate the traction magnitude * added a damageUpperBound variable to indicate the upper limit of the phase-field * renamed the flag to add the external driving force for the nucleation model * changed the default value of upper bound * removed the function to apply damage on traction B.C. * reset the default value of the upper bound of damage * added a lower limit parameter for the degradation * added a damage upper bound constraint * changed the parameter for the smoke file * removed the unnecessary changes in TractionBoundaryCondition * added discretization for surface generator in parameter file and changed MeshTargets loop. * added a flag to indicate whether to apply the nodal damage irreversibility constraint * made the signs consistent when assembling the system * added the flag to indicate the crack irreversibility constraint * removed the discretization in surface generator parameters * rebaselined for the phasefield_nucleation_formulation * added checks of input parameters if the extDrivingForceFlag is turned on * added lapack routines and functions to compute least squares solutions * added the function to update pressure gradient in a cell * added a phase-field poromechanics solver * modified Damage model for pressurized fracture * added new variables into spectral and vol-dev damage models * added a porous solid model for damage model * added new PhaseFieldPoromechancisSolver into CmakeLists * changed damage variable name according to the Damage model * added a poromechanics damage kernel for assembly of solid mechanics and flow equation. * added the permeability model for damaged materials * added a fracture injection example * added pressure effect term in the damage equation * added the input file for the wellbore problem * temporarily turned off chechSystemSolution * applied damage on surface traction * added an input file for the wellbore concrete specimen * added a wellbore example for the solid phase-field nucleation solver * updated the schema and docs for the new solver and models * modified parameter in damage permeability * changed the scale ont he degraded traction * added the pressurized damage kernel * added the function to apply the degradation on traction B.C. * moved pressureGradient and its update function to SinglePhaseBase * refactored the damage kernel and PorousDamageSolid for singlePhasePoromechanics * updated total stress calculation in the phase-field poromechancis solve * modified phaseFieldPoromechanics to fit in the template of coupledSolver * compiled with the new phaseFieldPoromechanics solver * removed unnecessary pressure gradient update * change the imposed damage to 1 for irreversibility * changed the fracture pressure term to pressure_n * modified injection case xml * corrected the string array type * to model pressurized crack * changed the linear solver for the damage solver * added fields of certain parameters to allow for random distribution * added field variables for compressive strength and delat coefficient * made SinglePhasePoromechanicsDamage a derivative of SinglePhasePoromechanics kernel and updated copyright content * made the damage dependent constant an input parameter * removed pressurized damage kernel for nonporous impermeable solid in this branch * modified xmls and added a smoke test * added SinglePhasePoromechanics_impl.hpp to the instantiation of SinglePhasePoromechanicsDamage --------- commit ccc9eac Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 18:04:09 2025 +0100 🐛 forgot a side case (when we have no data) commit 6bb553c Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 17:49:17 2025 +0100 🎨 uncrustify + better suggestion commit 9a7f8be Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 17:48:55 2025 +0100 🎨 uncrustify + better suggestion commit 1dfb5d2 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:51:54 2025 +0100 🐛 fix compilation by using the right macro commit 08bd71b Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:49:19 2025 +0100 🐛 fix compilation by removing a unused var, and actually use another one. commit 6cd6a20 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:42:03 2025 +0100 🎨 uncrustify commit 3cd1826 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:30:07 2025 +0100 🦺 rebaseline commit 50e1739 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 15:53:04 2025 +0100 🎨 uncoupled title & header layout populating (we will later be able to insert other content in-between more easily) commit beda2bb Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 13:45:17 2025 +0100 📝 documenting test goal explanation commit c734b7b Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 11:47:34 2025 +0100 📝 adding a note for error management commit 0879433 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 10:31:38 2025 +0100 📦 schemaschemaschemaschemaschema commit a00f6bc Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 10:30:30 2025 +0100 🦺 rebaseline commit 743a89f Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 16:35:47 2025 +0100 🔧 support for std::filesystem for CUDA/GCC8.5 compilers commit 5db0b2e Merge: 8febff2 24eca07 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 16:23:59 2025 +0100 Merge remote-tracking branch 'origin/develop' into bugfix/rey/csv-export-fail commit 8febff2 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 15:30:58 2025 +0100 ✨ ✅ support table formatting without layout specification, add a unit-test for it commit 24eca07 Author: Dickson Kachuma <81433670+dkachuma@users.noreply.github.com> Date: Wed Mar 19 09:28:30 2025 -0500 feat: Soreide-Whitson equation of state (#3597) Co-authored-by: Omar Duran <omaryesiduran@gmail.com> commit 4b13f7b Author: Dickson Kachuma <81433670+dkachuma@users.noreply.github.com> Date: Wed Mar 19 09:28:06 2025 -0500 feat: Add precision field to PVTDriver (#3600) commit 8620c7b Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 11:17:44 2025 +0100 Merge remote-tracking branch 'origin/develop' into bugfix/rey/csv-export-fail commit 33fc3fc Author: Pavel Tomin <paveltomin@users.noreply.github.com> Date: Tue Mar 18 18:57:40 2025 -0400 build: remove large mem (#3590) commit 8d9ac9d Author: Dickson Kachuma <81433670+dkachuma@users.noreply.github.com> Date: Tue Mar 18 16:26:35 2025 -0500 refactor: Separate compositional fluid parameters from models (#3594) commit c988661 Author: Omar Duran <omaryesiduran@gmail.com> Date: Tue Mar 18 12:26:14 2025 -0700 ci: oduran/xml_validation (#3588) commit cfab6c8 Author: Arnaud DUDES <155963334+arng40@users.noreply.github.com> Date: Tue Mar 18 20:24:00 2025 +0100 docs: Log level documentation on remaining package (#3494) commit 96a9449 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 18 11:59:52 2025 +0100 🚧 added no-layout formatter (untested) commit c636a09 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 18 11:57:45 2025 +0100 📦 other schema commit a7f1771 Merge: e413bf2 7000da0 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 18 11:54:47 2025 +0100 Merge remote-tracking branch 'origin/develop' into bugfix/rey/csv-export-fail commit 7000da0 Author: Randolph Settgast <settgast1@llnl.gov> Date: Mon Mar 17 11:11:58 2025 -0700 remove some constructors/destructors in VEM implementation to avoid warnings (#3599)

commit 88e5db1 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 27 13:58:47 2025 +0100 Revert "➖ removal of gcc<9 compiler option" This reverts commit 977a24d. commit 5759d0a Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 27 13:43:44 2025 +0100 🚨 🎨 remove some CUDA warning commit 977a24d Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 27 10:18:04 2025 +0100 ➖ removal of gcc<9 compiler option commit 9f032fd Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 26 15:10:18 2025 +0100 🎨 uncrustify commit 84894bb Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 26 14:02:47 2025 +0100 📝 last lacking docs commit a9298de Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 26 13:53:39 2025 +0100 📝 🐛 doxygen region not suported for this usecase :'( commit 35911a0 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 26 12:01:42 2025 +0100 📝 🎨 Improve Cell object robustness & encapsulation + docs commit dbc7f0d Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 25 16:07:24 2025 +0100 🐛 compil fix commit b37eefc Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 25 15:43:27 2025 +0100 🐛 compil fix commit 4642bda Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 25 15:36:44 2025 +0100 🐛 🎨 repaired addSubColumns so it really append + added the "Cell" type to base Column on it and propose a type that stores the setting AND the data (for further works) commit 47b493b Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 25 11:27:28 2025 +0100 🦺 rebaseline commit 953ea3b Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 25 11:24:35 2025 +0100 🐛 completed the hidden column fix in commit e495521 commit 1202d4e Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 25 11:11:06 2025 +0100 📝 docs commit 9327e03 Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon Mar 24 17:55:13 2025 +0100 📝 docs commit e495521 Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon Mar 24 16:51:43 2025 +0100 🐛 ✅ 2 bug fixes: when parent column only is not visible (now hides children) + it is no longer possible to enter wrong visibility value commit 7972176 Merge: 9653609 3c4000e Author: MelReyCG <melvin.rey@capgemini.com> Date: Mon Mar 24 15:47:14 2025 +0100 Merge remote-tracking branch 'origin/develop' into bugfix/rey/csv-export-fail commit 3c4000e Author: Pavel Tomin <paveltomin@users.noreply.github.com> Date: Sat Mar 22 08:35:57 2025 -0500 feat: make possible to use solid mechanics solver to perform poromechanics initialization (#3396) commit 2118b48 Author: Dickson Kachuma <81433670+dkachuma@users.noreply.github.com> Date: Fri Mar 21 17:53:47 2025 -0500 feat: Add a compositional Phillips brine density model (#3598) Co-authored-by: Omar Duran <omaryesiduran@gmail.com> commit 8863635 Author: Brian Han <han12@llnl.gov> Date: Fri Mar 21 11:53:52 2025 -0700 Fix links in spack docs; reword beginning section (#3550) Co-authored-by: Matteo Cusini <49037133+CusiniM@users.noreply.github.com> commit ab75c18 Author: Brian Han <han12@llnl.gov> Date: Fri Mar 21 09:22:21 2025 -0700 fix: CI style and docs checks (#3584) * Add host-config path so style and docs jobs can find deps * Capture return code of cmake configuration line in config-build.py instead of always returning success on cmake configure line call * Fix doyxgen errors - undo deleted getMeshTargets() comment * Rerun uncrustify --------- Co-authored-by: Matteo Cusini <49037133+CusiniM@users.noreply.github.com> commit 9653609 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 14:10:26 2025 +0100 🐛 ✅ finalized the fix for when the reference row has merged cell : removed the reference-row concept in favor of a columns-width array commit 158485e Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 14:07:48 2025 +0100 🧪 added failing test for the side case when the reference row has merged cell(s) commit 8b425a9 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 14:05:09 2025 +0100 🐛 ✅ finalized the fix for the side-case bug (when only one merged line) + correct unit test commit 3d71945 Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 12:05:38 2025 +0100 🐛 🚧 fix two side-case bugs + docs on a bug to fix/warn later commit 8ff38d3 Merge: aea705c 5732c5c Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 10:19:40 2025 +0100 Merge commit '5732c5c0be16ead0b846c302ed06d30988da4a9f' into bugfix/rey/csv-export-fail commit aea705c Author: MelReyCG <melvin.rey@capgemini.com> Date: Fri Mar 21 10:11:05 2025 +0100 🦺 rebaseline commit 5732c5c Author: Frank Fei <frankfei0929@gmail.com> Date: Thu Mar 20 18:23:52 2025 -0700 feat: phase-field nucleation modeling of hydraulic fracturing (#2125) * add constitutive files for the phase-field nucleation formulation * add constitutive files for the phase-field nucleation formulation * modify the pf formulation by adding an external driving force * add a member variable for the external driving force and a member function to output it * add the new constitutive for pf nucleation into the passthru * Add DamageExtDrivingForce files into CMakeLists * solve the segmentation error * Add an input file for the phase-field nucleation formulation * correct the calculation of the external driving force * adding TableFunction files for the surfing boundary condition * adding an option variable for the external driving force term * adding the initial fracture and surfing boundary condition * set upper and lower bounds of the damage when calculating the degradation function * correct the typo in the formulation * set a threshold for the strain energy based on c_e to keep the damage value non-negative * clean the phase-field code and add the external driving force term into the Damage base code * Add a switch of the external driving force to check if the nucleation formulation is called * clean the phase-field code by merging the nucleation formulation into the damage base code * create the input file and mesh for the three point test * add new mesh files for the 3 points loading test * change the upper limit of d to 1 in the degradation function * add the input file for the test to calibrate modeling parameters * add an input file for the wellbore problem * fixed changes in schema and .rst files for nucleation formulation * remove unnecessary function for specifying the nodal value * fixed the linear solver parameters and changed the material parameters to cement * added a small tolerance in the degradation such that it has a small residual when d = 1 * modified the upper threshold of d * added a nodal scale array to calculate the traction magnitude * added a damageUpperBound variable to indicate the upper limit of the phase-field * renamed the flag to add the external driving force for the nucleation model * changed the default value of upper bound * removed the function to apply damage on traction B.C. * reset the default value of the upper bound of damage * added a lower limit parameter for the degradation * added a damage upper bound constraint * changed the parameter for the smoke file * removed the unnecessary changes in TractionBoundaryCondition * added discretization for surface generator in parameter file and changed MeshTargets loop. * added a flag to indicate whether to apply the nodal damage irreversibility constraint * made the signs consistent when assembling the system * added the flag to indicate the crack irreversibility constraint * removed the discretization in surface generator parameters * rebaselined for the phasefield_nucleation_formulation * added checks of input parameters if the extDrivingForceFlag is turned on * added lapack routines and functions to compute least squares solutions * added the function to update pressure gradient in a cell * added a phase-field poromechanics solver * modified Damage model for pressurized fracture * added new variables into spectral and vol-dev damage models * added a porous solid model for damage model * added new PhaseFieldPoromechancisSolver into CmakeLists * changed damage variable name according to the Damage model * added a poromechanics damage kernel for assembly of solid mechanics and flow equation. * added the permeability model for damaged materials * added a fracture injection example * added pressure effect term in the damage equation * added the input file for the wellbore problem * temporarily turned off chechSystemSolution * applied damage on surface traction * added an input file for the wellbore concrete specimen * added a wellbore example for the solid phase-field nucleation solver * updated the schema and docs for the new solver and models * modified parameter in damage permeability * changed the scale ont he degraded traction * added the pressurized damage kernel * added the function to apply the degradation on traction B.C. * moved pressureGradient and its update function to SinglePhaseBase * refactored the damage kernel and PorousDamageSolid for singlePhasePoromechanics * updated total stress calculation in the phase-field poromechancis solve * modified phaseFieldPoromechanics to fit in the template of coupledSolver * compiled with the new phaseFieldPoromechanics solver * removed unnecessary pressure gradient update * change the imposed damage to 1 for irreversibility * changed the fracture pressure term to pressure_n * modified injection case xml * corrected the string array type * to model pressurized crack * changed the linear solver for the damage solver * added fields of certain parameters to allow for random distribution * added field variables for compressive strength and delat coefficient * made SinglePhasePoromechanicsDamage a derivative of SinglePhasePoromechanics kernel and updated copyright content * made the damage dependent constant an input parameter * removed pressurized damage kernel for nonporous impermeable solid in this branch * modified xmls and added a smoke test * added SinglePhasePoromechanics_impl.hpp to the instantiation of SinglePhasePoromechanicsDamage --------- commit ccc9eac Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 18:04:09 2025 +0100 🐛 forgot a side case (when we have no data) commit 6bb553c Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 17:49:17 2025 +0100 🎨 uncrustify + better suggestion commit 9a7f8be Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 17:48:55 2025 +0100 🎨 uncrustify + better suggestion commit 1dfb5d2 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:51:54 2025 +0100 🐛 fix compilation by using the right macro commit 08bd71b Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:49:19 2025 +0100 🐛 fix compilation by removing a unused var, and actually use another one. commit 6cd6a20 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:42:03 2025 +0100 🎨 uncrustify commit 3cd1826 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 16:30:07 2025 +0100 🦺 rebaseline commit 50e1739 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 15:53:04 2025 +0100 🎨 uncoupled title & header layout populating (we will later be able to insert other content in-between more easily) commit beda2bb Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 13:45:17 2025 +0100 📝 documenting test goal explanation commit c734b7b Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 11:47:34 2025 +0100 📝 adding a note for error management commit 0879433 Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 10:31:38 2025 +0100 📦 schemaschemaschemaschemaschema commit a00f6bc Author: MelReyCG <melvin.rey@capgemini.com> Date: Thu Mar 20 10:30:30 2025 +0100 🦺 rebaseline commit 743a89f Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 16:35:47 2025 +0100 🔧 support for std::filesystem for CUDA/GCC8.5 compilers commit 5db0b2e Merge: 8febff2 24eca07 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 16:23:59 2025 +0100 Merge remote-tracking branch 'origin/develop' into bugfix/rey/csv-export-fail commit 8febff2 Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 15:30:58 2025 +0100 ✨ ✅ support table formatting without layout specification, add a unit-test for it commit 24eca07 Author: Dickson Kachuma <81433670+dkachuma@users.noreply.github.com> Date: Wed Mar 19 09:28:30 2025 -0500 feat: Soreide-Whitson equation of state (#3597) Co-authored-by: Omar Duran <omaryesiduran@gmail.com> commit 4b13f7b Author: Dickson Kachuma <81433670+dkachuma@users.noreply.github.com> Date: Wed Mar 19 09:28:06 2025 -0500 feat: Add precision field to PVTDriver (#3600) commit 8620c7b Author: MelReyCG <melvin.rey@capgemini.com> Date: Wed Mar 19 11:17:44 2025 +0100 Merge remote-tracking branch 'origin/develop' into bugfix/rey/csv-export-fail commit 33fc3fc Author: Pavel Tomin <paveltomin@users.noreply.github.com> Date: Tue Mar 18 18:57:40 2025 -0400 build: remove large mem (#3590) commit 8d9ac9d Author: Dickson Kachuma <81433670+dkachuma@users.noreply.github.com> Date: Tue Mar 18 16:26:35 2025 -0500 refactor: Separate compositional fluid parameters from models (#3594) commit c988661 Author: Omar Duran <omaryesiduran@gmail.com> Date: Tue Mar 18 12:26:14 2025 -0700 ci: oduran/xml_validation (#3588) commit cfab6c8 Author: Arnaud DUDES <155963334+arng40@users.noreply.github.com> Date: Tue Mar 18 20:24:00 2025 +0100 docs: Log level documentation on remaining package (#3494) commit 96a9449 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 18 11:59:52 2025 +0100 🚧 added no-layout formatter (untested) commit c636a09 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 18 11:57:45 2025 +0100 📦 other schema commit a7f1771 Merge: e413bf2 7000da0 Author: MelReyCG <melvin.rey@capgemini.com> Date: Tue Mar 18 11:54:47 2025 +0100 Merge remote-tracking branch 'origin/develop' into bugfix/rey/csv-export-fail commit 7000da0 Author: Randolph Settgast <settgast1@llnl.gov> Date: Mon Mar 17 11:11:58 2025 -0700 remove some constructors/destructors in VEM implementation to avoid warnings (#3599)

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Comment thread src/coreComponents/constitutive/fluid/multifluid/LogLevelsInfo.hpp Outdated

Comment thread src/coreComponents/constitutive/fluid/multifluid/CO2Brine/LogLevelsInfo.hpp Outdated

Comment thread src/coreComponents/mesh/LogLevelsInfo.hpp Outdated

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	* This file contains common log level informations for physics solvers
	* This file contains common log level informations for physics solvers

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