$ whoami
Research software and machine-learning engineer.
$ cat focus.txt
Reproducible scientific systems · optimization · computational biology
security analytics · developer tooling · scientific visualization
$ pwd
HSE University · Moscow, Russia
I build tested, reproducible software for research and engineering. My work connects scientific computing with practical systems: from phylogenetic tools and evolutionary-optimization experiments to host anomaly detection and GitHub repository intelligence.
| Project | What it does | Stack |
|---|---|---|
| QNode Repository Auditor | Deployed GitHub App for repository readiness, pull-request risk, companion-test suggestions, CODEOWNERS coverage, and review maps. Live app | Python · GitHub API · GitHub Checks |
| Aspartik contributions | Upstream phylogenetic tree models, distance algorithms, Python bindings, NEXUS/Newick parsing, SVG rendering, tests, fixtures, and benchmarks. | Rust · Python · PyO3 |
| CEOP research software | Reproducible evaluation tooling for evolutionary optimizers across 39 constrained engineering problems. | Python · optimization · statistical evaluation |
| ML Host Anomaly Detection | Privacy-aware UEBA research prototype using host telemetry, autoencoder scoring, calibrated rules, and chronological evaluation. | Python · PyTorch · security analytics |
IEEE DCHPC 2026 conference paper on visualizing spatial-data workflows and quantum-inspired candidate stages.
DOI · IEEE Xplore · Scopus · NASA ADS
The publication is indexed in Scopus and the NASA Astrophysics Data System (NASA ADS).
Role-based academic scheduling software with defense windows, polling, voting, authentication, notes, and data export.
- Moodle Poll Plugin — academic voting and scheduling with RBAC, CSRF protection, i18n, statistics, and Excel export.
- RNA-seq Analysis — reproducible Snakemake, HISAT2, featureCounts, MultiQC, and DESeq2 workflow.
- SolidJS bModel Visualizer — interactive D3 visualization for phylogenetic model support.
languages Python · Rust · TypeScript · SQL · JavaScript · C++
research PyTorch · scikit-learn · Qiskit · DESeq2 · DADA2
systems PostgreSQL · Flask · Docker · RabbitMQ · GitHub Actions
visuals React · SolidJS · D3.js
Open to research-software collaboration and engineering opportunities.
mhaque@edu.hse.ru




