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AlleleFlux
AlleleFlux PublicAlleleFlux: A tool to identify genomic targets of natural selection in bacterial communities
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DietDrivenMicrobiota
DietDrivenMicrobiota PublicUsing an in vivo evolve and resequence approach in wild-derived mice, we investigated how gut microbes might adapt to a shift in host diet. We found that a change to a high fat diet leads to near-u…
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phylosymbiosis_simulator
phylosymbiosis_simulator PublicPython scripts for simulating changes in microbiome composition along a host phylogeny
Python
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- AlleleFlux Public
AlleleFlux: A tool to identify genomic targets of natural selection in bacterial communities
- DietDrivenMicrobiota Public
Using an in vivo evolve and resequence approach in wild-derived mice, we investigated how gut microbes might adapt to a shift in host diet. We found that a change to a high fat diet leads to near-ubiquitous adaptive evolution within the gut microbiota of mice.
- alleleflux-explorer Public
- phylosymbiosis_simulator Public
Python scripts for simulating changes in microbiome composition along a host phylogeny
- bioinfo-scripts Public
- tutorials Public
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