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@NLM-DIR

NLM Division of Intramural Research

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  1. TPMCalculator TPMCalculator Public

    TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

    C++ 138 34

  2. vadr vadr Public

    Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

    Perl 115 27

  3. BAMscale BAMscale Public

    BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

    C 74 17

  4. NSForest NSForest Public

    A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing

    HTML 70 25

  5. pm4ngs pm4ngs Public

    Project Manager for NGS data analysis

    Python 31 10

  6. cwl-ngs-workflows-cbb cwl-ngs-workflows-cbb Public

    A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

    Common Workflow Language 28 11

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