spatial data having multiple cell type annotation per spot ID

[abulislam]

Hi,

to run spaCI, ST data requires a metadata consisting of the cell labels.
We used CytoSPACE for cell annotation using external reference scRNAseq data. The CytoSPACE provides more than one cell type (different fraction) per spot ID.

SpotID | CellType
spot-1 | mast_cell
spot-1 | NK_cell

Now how to deal with this?

thanks