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STOmics

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  1. Stereopy Stereopy Public

    A toolkit of spatial transcriptomic analysis.

    Jupyter Notebook 291 73

  2. SAW SAW Public

    HTML 199 33

  3. StereoMMv1 StereoMMv1 Public

    StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information interaction within modalities is strengthened by introducing an a…

    Jupyter Notebook 39 1

  4. cellbin2 cellbin2 Public

    This repository is for CellBin research group

    Python 36 10

  5. CellBin CellBin Public

    Tools for generating single-cell gene expression data

    Python 34 4

  6. StereoSiTE StereoSiTE Public

    Spatial transcriptome analysis in python

    Jupyter Notebook 25 1

Repositories

Showing 10 of 32 repositories
  • cellbin2 Public

    This repository is for CellBin research group

    STOmics/cellbin2's past year of commit activity
    Python 36 MIT 10 2 0 Updated Sep 1, 2026
  • StereoTools_manual Public
    STOmics/StereoTools_manual's past year of commit activity
    HTML 0 0 0 0 Updated Aug 3, 2026
  • Stereopy Public

    A toolkit of spatial transcriptomic analysis.

    STOmics/Stereopy's past year of commit activity
    Jupyter Notebook 291 MIT 73 29 6 Updated Jul 17, 2026
  • stereo3d Public
    STOmics/stereo3d's past year of commit activity
    Python 5 0 2 0 Updated Jul 2, 2026
  • SDAS Public
    STOmics/SDAS's past year of commit activity
    Python 9 5 1 2 Updated Jun 29, 2026
  • StereoMMv1 Public

    StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information interaction within modalities is strengthened by introducing an attention mechanism.

    STOmics/StereoMMv1's past year of commit activity
    Jupyter Notebook 39 1 2 0 Updated Dec 23, 2025
  • CoDi Public
    STOmics/CoDi's past year of commit activity
    Jupyter Notebook 2 0 2 0 Updated Oct 21, 2025
  • CSRefiner Public
    STOmics/CSRefiner's past year of commit activity
    Python 5 MIT 0 0 0 Updated Oct 11, 2025
  • cs-benchmark Public

    This repository is for cell segmentation benchmark

    STOmics/cs-benchmark's past year of commit activity
    PureBasic 13 MIT 1 1 0 Updated Sep 17, 2025
  • STCellbin Public

    Enhanced application on generating single-cell gene expression profile for high-resolution spatial transcriptomics.

    STOmics/STCellbin's past year of commit activity
    Python 9 MIT 1 2 0 Updated Sep 5, 2025
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