Wedge lab

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1. battenberg battenberg Public

   Battenberg R package for subclonal copynumber estimation

   R 101 61

2. dpclust dpclust Public

   Dirichlet Process based methods for subclonal reconstruction of tumours

   R 34 19

3. dpclust3p dpclust3p Public

   Dirichlet Process Clustering Pre-Processing Pipeline

   R 10 13

4. AmplificationTimeR AmplificationTimeR Public

   Code for timing amplifications

   R 7 1

5. Gel_pan_cancer_signatures Gel_pan_cancer_signatures Public

   Comprehensive repertoire of the chromosomal alteration and mutational signatures across 16 cancer types from 10,983 cancer patients_doi.org/10.1101/2023.06.07.23290970

   Python 3

6. SpatialPhyloPlot SpatialPhyloPlot Public

   An R package to automate plotting of phylogenetic trees from spatial transcritpomics data.

   HTML 3