Change on trimmomatic.py template - #178

Merged

cimendes merged 4 commits into

devfrom

fix_trimmomatic_mac

Jan 26, 2019

Commits on Dec 6, 2018

Move trimmomatic trimlog from mounted dir to /tmp due to severe performance hit in docker for mac due to I/O issues in the mounted dir.

João André Carriço
and
bfrgoncalves
committed
1004dc8
remove rstrip for log_id retrieval
bfrgoncalves
committed
1e6f0cb

Commits on Jan 4, 2019

remove shell=True from trimmomatic's execution command
cimendes
committed
d08a85a

Commits on Jan 7, 2019

implemented the tempfile module to generate a temp dir for the trimmomatic log file (needed for compatibility with docker for macOS)
cimendes
committed
f037a03