Add Kraken2 component - #185

Merged

cimendes merged 18 commits into

devfrom

Jan 2, 2019

Commits on Dec 12, 2018

- added kraken2 component and documentation
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9cc8b29

Commits on Dec 13, 2018

- fix krakenDB parameter
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b4ba511

Commits on Dec 17, 2018

- added support for maxbin2 reports (sample specific)
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5084e56
Merge branch 'dev' into kraken2
cimendes
authored
d7a49f1

Commits on Dec 18, 2018

clean import
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a05992f
clean up
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a45bda5

Commits on Dec 31, 2018

Update docs/user/components/kraken2.rst

tiagofilipe12
and
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664e04e
Addressing comments in #185 - docs and comments cleanup
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6f1bf17
Addressing comments in #185 - tsv parsing and writing to report.json
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6097d9b
added comments - review #185
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f15aebe
Update changelog.md

ODiogoSilva
and
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629a0fe
Update flowcraft/generator/components/metagenomics.py

ODiogoSilva
and
cimendes
authored
e312ebd
Update flowcraft/templates/process_tsv.py

tiagofilipe12
and
cimendes
authored
735d8d3
added comments - review #185
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7f11a2b
minor fix in comment - review #187
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c00760f
Merge branch 'dev' into kraken2
cimendes
authored
b637e25

Commits on Jan 2, 2019

Update flowcraft/generator/components/metagenomics.py

ODiogoSilva
and
cimendes
authored
b137c56
Merge branch 'dev' into kraken2
cimendes
authored
b34dfce