Smith-Waterman Algorithm - #292
Merged
Merged
Conversation
| alignB = string(stringB[j-1]) + alignB | ||
| i-- | ||
| j-- | ||
| } else if matrix[i][j] == matrix[i-1][j]+scoring.GapPenalty { |
Collaborator
There was a problem hiding this comment.
this condition isn't covered by tests
Contributor
Author
There was a problem hiding this comment.
Good point! Just changed the test case to have gaps on both alignment strings: 98b16bf
| alignA = "-" + alignA | ||
| alignB = string(stringB[j-1]) + alignB | ||
| j-- | ||
| } else { |
Collaborator
There was a problem hiding this comment.
is there any case where this can happen? Shouldn't panic but should return an error if this case is possible.
Contributor
Author
There was a problem hiding this comment.
I am pretty sure this case should never happen. It would mean that the matrix was constructed erroneously or there is a bug somewhere.
Collaborator
Contributor
Author
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.