BedTool.genome_coverage sometimes returns bedGraph-like output, sometimes not. In fact, by default, it doesn't return a valid BED-ish format file.
See #110, #111, #112.
note to future self: this prob needs yet another kwarg to bedtool._wraps, and you will need to go through BEDTools programs and args to work out which don't create valid output files.
BedTool.genome_coveragesometimes returns bedGraph-like output, sometimes not. In fact, by default, it doesn't return a valid BED-ish format file.See #110, #111, #112.
note to future self: this prob needs yet another kwarg to
bedtool._wraps, and you will need to go through BEDTools programs and args to work out which don't create valid output files.