Issues

• spatialPerCellQC() 0 elements in value to replace 466401 elements

  drighelli/SpaceTrooper#62 · Filter by author ethanlewisbaird opened on Feb 26, 2026
  4

• CosMx protein data: "Error in checkOutliers(spe1, verbose) : Not enough outlier cells for log2CountArea. QC score computation cannot be performed"

  drighelli/SpaceTrooper#50 · Filter by author joaolsf opened on Nov 26, 2025
  2

• subsetting by fov doesn't affect fov_positions

  documentationenhancement
  drighelli/SpaceTrooper#48 · Filter by author drighelli opened on Nov 14, 2025

• fov position file unaligned with centroids coordinates

  enhancementquestion
  drighelli/SpaceTrooper#47 · Filter by author drighelli opened on Nov 14, 2025
  3

• CosMx isn't Nanostring anymore

  enhancement
  drighelli/SpaceTrooper#44 · Filter by author drighelli opened on Oct 19, 2025
  1

• omit realizing transcripts

  enhancement
  drighelli/SpaceTrooper#43 · Filter by author HelenaLC opened on Oct 7, 2025
  3

  

• computeSpatialOutlier needs to check existence of outlier colnames

  enhancement
  drighelli/SpaceTrooper#32 · Filter by author drighelli opened on May 14, 2025

• readPolygons does not support h5

  enhancement
  drighelli/SpaceTrooper#29 · Filter by author drighelli opened on Apr 24, 2025
  1

• plotCentroids could benefit of a order_by argument

  enhancement
  drighelli/SpaceTrooper#23 · Filter by author drighelli opened on Feb 7, 2025

• polygons geometry provide errors when not loaded with SpaceTrooper

  drighelli/SpaceTrooper#22 · Filter by author drighelli opened on Jan 29, 2025
  1

• store polygons as parquet

  enhancement
  drighelli/SpaceTrooper#21 · Filter by author drighelli opened on Jan 29, 2025

• plotCentroids and plotPolygons should allow user to plot subset of image

  enhancement
  drighelli/SpaceTrooper#9 · Filter by author drisso opened on Jan 16, 2025