Clarifying a few steps in the install - #10
Merged
Conversation
I ran across a few difficulties in installation and setup. Without these additions, I was seeing e.g.
```
Collecting rpy2
Downloading rpy2-3.4.4.tar.gz (187 kB)
|████████████████████████████████| 187 kB 9.3 MB/s
ERROR: Command errored out with exit status 1:
command: /Users/jhemann/Documents/Trinity/tyrell/venv/bin/python3.9 -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/lv/300nvm1d6lq_dmww4c8h9z680000gn/T/pip-install-jzjvdvx6/rpy2_8aca3d4c44d8453da3af9292c3e428ae/setup.py'"'"'; __file__='"'"'/private/var/folders/lv/300nvm1d6lq_dmww4c8h9z680000gn/T/pip-install-jzjvdvx6/rpy2_8aca3d4c44d8453da3af9292c3e428ae/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /private/var/folders/lv/300nvm1d6lq_dmww4c8h9z680000gn/T/pip-pip-egg-info-y20nejf7
cwd: /private/var/folders/lv/300nvm1d6lq_dmww4c8h9z680000gn/T/pip-install-jzjvdvx6/rpy2_8aca3d4c44d8453da3af9292c3e428ae/
Complete output (4 lines):
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
Error: rpy2 in API mode cannot be built without R in the PATH or R_HOME defined. Correct this or force ABI mode-only by defining the environment variable RPY2_CFFI_MODE=ABI
['cffi>=1.10.0', 'jinja2', 'pytz', 'tzlocal']
----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/cb/a5/354fdfc13ac30fd496c100a66587bbf7f0adcd320fa751311566f198bdbd/rpy2-3.4.4.tar.gz#sha256=e198862701bfc6d3da4a2fcf18910d71521b385283abdb2121e07b874add8e50 (from https://pypi.org/simple/rpy2/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
```
chyanju
approved these changes
Jan 5, 2022
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
I ran across a few difficulties in installation and setup. Without these additions, I was seeing e.g.