feat: OME-ZARR sharding, default progress bars, numpydoc sweep#20
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- shard=: False (default) / True (auto ~512 MB shards) / explicit tuple, threaded through to_ome_zarr, add_pyramid, write_labels and the Imaris copy path. Sharded writes create the array explicitly and store one whole shard per task (per-chunk writes into a shard would race). - progress bars now default on for every write step (to_ome_zarr, pyramid levels, label write) and tile_process; pass progress=False to silence. - give every function a numpy-style docstring with Parameters/Returns (numpydoc 'name : type' form), per AGENTS.md. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Blank line after headings, language hints on code fences and list indentation, applied by the markdown linter across the guide/examples. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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Sharding
to_ome_zarr(..., shard=...):False(default, max compatibility),True(auto ~512 MB shards → ~100× fewer files), or an explicit shard tuple. Threaded throughadd_pyramid/write_labels/Imaris copy. Sharded writes create the array explicitly and store one whole shard per task (per-chunk writes into a shared shard would race/corrupt). Verified data round-trips; zarr-v3 only (ignored otherwise).Progress bars (default on)
Every write step shows a dask progress bar by default —
to_ome_zarr, each pyramid level, the label write, andtile_process.progress=Falsesilences.Docstrings
Every function now has a numpy-style docstring with
Parameters/Returnsin numpydocname : typeform (per AGENTS.md). AST audit: 0 functions missing.Tests: 30 passed, 1 skipped; ruff +
mkdocs --strictclean. (Separate commit applies markdownlint fixes across the guide.)🤖 Generated with Claude Code