chore(release): release v0.4.1

[jafreck]

Closes #488

Release

Bumps @jafreck/lore from 0.4.0 to 0.4.1 in both package manifests.

Highlights since v0.4.0

• schema v3 with hidden candidate generations, atomic promotion, effective overlay views, writer leases, and fencing
• doctor, validate, and migrate workflows with strict and migration-grade index-health profiles
• hardened C/C++ indexing through validated compilation databases, deterministic SCIP merging, position conversion, span recovery, include and macro indexing, provenance, and bounded LSP supplementation
• host-controlled execution permissions for subprocesses, builds, custom providers, auto-installation, command working directories, and external build roots
• effective-state graph reads and repaired references when overlays replace baseline targets
• private secure SCIP output, bounded response-file processing, filtered semantic retrieval, explicit embedding disablement, and resilient refresh/watch behavior
• consolidated current documentation and removed historical benchmark, audit, and design snapshots
• dependency and CI action updates

Compatibility notice

Lore remains pre-1.0. This patch release includes intentional breaking behavior:

• on-disk schema v3 with exact marker and compatibility checks
• default-deny execution authority
• strict CLI option parsing
• consistent one-based UTF-16 public source coordinates

Back up important databases. lore doctor and lore validate inspect databases read-only; use lore migrate for explicit upgrades or rebuild the index.

Validation

Node.js 22.22.1:

• npm run build
• npm run typecheck
• npm test — 2,023 passed, 75 environment-gated skips
• npm publish --dry-run
• git diff --check

npm audit --omit=dev reports four high-severity no-fix transitive findings inherited through Transformers.js; no direct remediation is currently available.

Compare

v0.4.0...release/v0.4.1

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 90.93%. Comparing base (88a6652) to head (488ff9d).

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #489   +/-   ##
=======================================
  Coverage   90.93%   90.93%           
=======================================
  Files          87       87           
  Lines       10823    10823           
  Branches     3450     3450           
=======================================
  Hits         9842     9842           
  Misses        981      981           

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