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Pull requests: ksahlin/strobealign
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Add anchors from filtered hits to the chains after chaining
feature
New feature or request
#622
opened Aug 13, 2026 by
NicolasBuchin
Collaborator
•
Draft
Trim a piecewise alignment to its best-scoring segment
feature
New feature or request
#621
opened Aug 6, 2026 by
NicolasBuchin
Collaborator
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Verify anchor k-mers before chaining and remove is_consistent checks
bug
Something isn't working
feature
New feature or request
#619
opened Aug 4, 2026 by
NicolasBuchin
Collaborator
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Replace block-aligner with a custom SIMD aligner
feature
New feature or request
high priority
Extra attention is needed
#614
opened Jul 30, 2026 by
NicolasBuchin
Collaborator
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Concatenate the reference contigs into one "flat" reference
#607
opened Jun 30, 2026 by
marcelm
Collaborator
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Compute single-end MAPQ score better by considering at least two mappings.
#600
opened Jun 11, 2026 by
ksahlin
Owner
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Add repetitive hits that are close to non-repetitive hits with a linear sweep
#590
opened Jun 4, 2026 by
ksahlin
Owner
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Experiment: Use a bit in RefRandstrobe to indicate whether it is filtered
#466
opened Dec 4, 2024 by
marcelm
Collaborator
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Use ksw2 to align soft-clipped ends from ungapped alignment
#382
opened Dec 17, 2023 by
marcelm
Collaborator
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