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Pull requests: microbiome/mia

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Pull requests list

Align method = 'log' with log2 and log10 in transformAssay (#813)
#848 opened Sep 8, 2026 by 0xMuluh Collaborator Loading…
1
Add Allen's phylogenetic entropy and Rao's quadratic entropy to addAlpha (#845)
#847 opened Sep 8, 2026 by 0xMuluh Collaborator Loading…
1
Support UniFrac and pre-calculated dissimilarity in getPERMANOVA (#844)
#846 opened Sep 8, 2026 by 0xMuluh Collaborator Loading…
1
Document Joint-RPCA filtering examples
#842 opened Aug 10, 2026 by sabujcb Contributor Loading…
1
Clarify study subjects in ADHD microbiota profiles
#828 opened May 22, 2026 by RiboRings Member Loading…
1
Initialise applyByModule
#825 opened May 11, 2026 by RiboRings Member Loading…
Initialise exporters to raw, qiime and mothur
#823 opened Apr 22, 2026 by RiboRings Member Loading…
6
Feature | Fetch data from Metalog and create a TSE object
#814 opened Apr 2, 2026 by raivo-otus Contributor Loading…
21
Convert MAE to TreeSE and back
#810 opened Mar 12, 2026 by TuomasBorman Contributor Loading…
2
Multimedia preprocessed demo data
#802 opened Jan 26, 2026 by YihanLiu4023 Loading…
6
Add rank support to getTop
#799 opened Jan 5, 2026 by 0xMuluh Collaborator Loading…
3
Add tree and metadata options to importers
#798 opened Jan 5, 2026 by 0xMuluh Collaborator Loading…
5
Add Rdpack references
#797 opened Jan 5, 2026 by 0xMuluh Collaborator Loading…
2
https://github.com/microbiome/OMA/issues/824
#794 opened Dec 8, 2025 by 0xMuluh Collaborator Loading…
5
DRAFT: Test/simplify transformation tests
#749 opened Jul 10, 2025 by raivo-otus Contributor Loading…
5
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