WIP: Add Ipyvolume 3d backend - #6232

Closed

GuillaumeFavelier wants to merge 104 commits into

mne-tools:masterfrom

GuillaumeFavelier:ipyvolume_backend

Commits on Feb 20, 2019

volume source space
Oleh Kozynets
committed
c0c88cb
Merge branch 'master' of https://github.com/mne-tools/mne-python
Oleh Kozynets
committed
f1d9689

Commits on Apr 18, 2019

Merge remote-tracking branch 'mne-tools/master'

OlehKSS
authored and
OlehKSS
committed
857b494

Commits on Apr 19, 2019

Initial commit
GuillaumeFavelier
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6f62261

Commits on Apr 22, 2019

Merge remote-tracking branch 'mne-tools/master'

OlehKSS
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OlehKSS
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849cd7e
test docs fix

OlehKSS
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OlehKSS
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f6c2162
renderer draft

OlehKSS
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OlehKSS
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f061885
camera rotation

OlehKSS
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OlehKSS
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62282b9

Commits on Apr 23, 2019

Add basic sphere mesh generation
GuillaumeFavelier
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0dae1d2
Create sphere toy example
GuillaumeFavelier
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361f661
Allow batch mode for spheres
GuillaumeFavelier
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1a958c0
Create prototype for plot_alignment
GuillaumeFavelier
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8f98b13
Fix scalars in surface()
GuillaumeFavelier
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4a20d6a
Remove useless cells in plot_alignement notebook
GuillaumeFavelier
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153c911
Add tranparency

OlehKSS
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OlehKSS
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8b36463
Merge remote

OlehKSS
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OlehKSS
committed
3ce14ff
fix of merge conflicts in Jupyter files

OlehKSS
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OlehKSS
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7ad9451
Fix surface colormap
GuillaumeFavelier
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d8b4a4d
Rename evoked notebook
GuillaumeFavelier
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1eba7ad
bgcolor fixed

OlehKSS
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OlehKSS
committed
65b23af
Merge branch 'ipyvolume_backend' of https://github.com/GuillaumeFavelier/mne-python into guillaume-ipyvolume-backend

OlehKSS
authored and
OlehKSS
committed
256751a
Add isolines
GuillaumeFavelier
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668fcda
Merge branch 'ipyvolume_backend' of https://github.com/GuillaumeFavelier/mne-python into ipyvolume_backend
GuillaumeFavelier
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a80e716

Commits on Apr 24, 2019

Moving Brain from GSOC project to MNE

OlehKSS
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OlehKSS
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bd8b79d
Comments clean-up

OlehKSS
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OlehKSS
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d74d1d5
docs for renderer were added

OlehKSS
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OlehKSS
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13a84e2
Renderer to Brain

OlehKSS
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OlehKSS
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41554ba

Commits on Apr 25, 2019

Examples were updated. Brain object for ipyvolume backend was added.

OlehKSS
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OlehKSS
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0fed3e1
Backend enum, mayavi backward compatability

OlehKSS
authored and
OlehKSS
committed
f5aa75a
Merge remote-tracking branch 'mne-tools/master'

OlehKSS
authored and
OlehKSS
committed
2e7b05d
Merge with master

OlehKSS
authored and
OlehKSS
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c1fe8d9
Add basic notebook interaction and mesh colors into vtki backend
GuillaumeFavelier
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177fdec
Fix scalars opacity management
GuillaumeFavelier
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153e08c
imports were cleaned

OlehKSS
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OlehKSS
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fc6b7a1

Commits on Apr 26, 2019

Add some required dependencies
GuillaumeFavelier
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6bde8c9
Fixes notebook problems with vtki

OlehKSS
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OlehKSS
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730400a
Merge branch 'ipyvolume_backend' of https://github.com/GuillaumeFavelier/mne-python into guillaume-ipyvolume-backend

OlehKSS
authored and
OlehKSS
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63f1e74
fix docstring problems

OlehKSS
authored and
OlehKSS
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6d13498
Add Brain to the API
GuillaumeFavelier
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c289384
Use copy_base_doc_to_subclass_doc
GuillaumeFavelier
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cd5e317
Merge branch 'master' into ipyvolume_backend
GuillaumeFavelier
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8048d2f
Merge branch 'ipyvolume_backend' of https://github.com/GuillaumeFavelier/mne-python into guillaume-ipyvolume-backend

OlehKSS
authored and
OlehKSS
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6f2b519
Add missing functions
GuillaumeFavelier
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c752f03
Remove cortex parameter docstring
GuillaumeFavelier
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7367229
fix imports error

OlehKSS
authored and
OlehKSS
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2cf8324
Merge branch 'ipyvolume_backend' of https://github.com/GuillaumeFavelier/mne-python into guillaume-ipyvolume-backend

OlehKSS
authored and
OlehKSS
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c438547
Catch and ignore ipyvolume DeprecationWarnings
GuillaumeFavelier
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e11814c
Add authors/license
GuillaumeFavelier
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8980df5
Docs decorator improvements

OlehKSS
authored and
OlehKSS
committed
6cebb0e
Merge branch 'ipyvolume_backend' of https://github.com/GuillaumeFavelier/mne-python into guillaume-ipyvolume-backend

OlehKSS
authored and
OlehKSS
committed
f2dedcf
Remove unused test
GuillaumeFavelier
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5278f93
Try r prefix for add_data() docstring
GuillaumeFavelier
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cd8e983
Update docstrings in brain.py
GuillaumeFavelier
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e046a92

Commits on Apr 27, 2019

Merge branch 'master' into ipyvolume_backend
GuillaumeFavelier
committed
96a73a7

Commits on May 20, 2019

Integrate reviews from jona
GuillaumeFavelier
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3ed49f1
Merge branch 'master' into ipyvolume_backend
GuillaumeFavelier
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eeab185
Integrate reviews from jona
GuillaumeFavelier
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75e6070

Commits on May 21, 2019

Unpack vertices into x, y, z
GuillaumeFavelier
committed
7f9d49d

Commits on May 22, 2019

Fix docstring
GuillaumeFavelier
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7e9be36
Merge branch 'master' into ipyvolume_backend
GuillaumeFavelier
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c2ef8c2
Fix typo in docstring
GuillaumeFavelier
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809bfa5

Commits on May 23, 2019

Remove notebooks directory
GuillaumeFavelier
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c9754dd
Minor edits for LGTM
GuillaumeFavelier
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ff8d0e1
First attempt to avoid GPG key error
GuillaumeFavelier
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2f96396

Commits on May 24, 2019

Fix DeprecationWarning issues
GuillaumeFavelier
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fbe2aed
Fix indexing issue with input arguments
GuillaumeFavelier
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843a4c1
Fix else statement in _check_array
GuillaumeFavelier
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663745a
Merge branch 'master' into ipyvolume_backend
GuillaumeFavelier
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f5e74ea
Update 3d backend features table
GuillaumeFavelier
committed
6e37ac1
Fix docstring and small edits
GuillaumeFavelier
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f5e5a9c
Add basic init test
GuillaumeFavelier
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14efba1
Add test for brain.add_data
GuillaumeFavelier
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6399aa4
Add docstring in the tests
GuillaumeFavelier
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6578887

Commits on May 27, 2019

Commits on May 29, 2019

Commits on Jun 4, 2019

Merge branch 'master' into ipyvolume_backend
GuillaumeFavelier
committed
01a1a85

Commits on Jun 5, 2019

Improve camera settings
GuillaumeFavelier
committed
1eb5dfd
Fix default values for plot_alignment
GuillaumeFavelier
committed
96eec44

Commits on Jun 6, 2019

Set the camera up component and tweak the distance
GuillaumeFavelier
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7abfb06
Improve opacity and quiver scaling
GuillaumeFavelier
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a7a450b
Reverse opacity to allow color blending
GuillaumeFavelier
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26bfda2
Fix isoline geometry but disable isoline color
GuillaumeFavelier
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c19bc4a
Fix color values for isolines
GuillaumeFavelier
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ac59b99
Update the 3d backends overview table
GuillaumeFavelier
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0eb46de
Fix table formatting
GuillaumeFavelier
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d6a969a
Add backface culling
GuillaumeFavelier
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3ce92e0

Commits on Jun 7, 2019

Fix missing parameter
GuillaumeFavelier
committed
760b6c7
Raise error for not implemented quiver
GuillaumeFavelier
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5369d7b
Add cylinder quiver
GuillaumeFavelier
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d509ee6
MAINT: move _ipyvolume.py into _ipyvolume/
Joan Massich
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99bba55
Fix: imports
Joan Massich
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f17b8f0
MNT: move vispy/vispy stuff all in a single place
Joan Massich
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b602147
Add arrow quiver
GuillaumeFavelier
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2af66cc
Fix backface culling
GuillaumeFavelier
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442f8b3
Fix unused variable issue
GuillaumeFavelier
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ab14470

Commits on Jun 8, 2019

Merge branch 'master' into ipyvolume_backend
GuillaumeFavelier
committed
c3ed007