0.1.3 - #39
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@@ Coverage Diff @@
## master #39 +/- ##
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- Coverage 57.8% 57.73% -0.08%
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Files 39 39
Lines 4399 4398 -1
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- Hits 2543 2539 -4
- Misses 1856 1859 +3
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ms609
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Jun 21, 2026
…n race (#39 closed) Post-flip cpp-search KPI (Hamilton, freshness-asserted ratchetCycles==6L): - QUALITY CLOSED: TS reaches the optimum on every dataset/seed; on Zanol (ns=9) TS is the ONLY reliably-1261 config (TNT fast configs miss +1). - Wall gap is NOT algorithmic: candidate-efficiency ~1.2-1.9x near-parity (count-based), throughput ~2x at-limit; the 8-110x is a default-budget mismatch (TS default heavy / TNT default light), corrected from an initial overreach (advisor). - #39 CLOSED: ratchet isolated race = cycle-quality PARITY (TNT does NOT reach the optimum in fewer reweight cycles) + ~2x at-limit throughput, no lever. - Component-isolation program now COMPLETE; only composition #40 (gated, modest + reliability-bounded) remains. Adds the ratchet-race driver, KPI CSVs, and the component-isolation plan STATUS. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
ms609
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Aug 5, 2026
Removes the vestiges of the dispatcher/queue system now that findings and tasks live in agent-issues/TreeSearch issues. Deleted: - to-do.md — its 12 still-open non-findings tasks are now issues #27-#38 (9 AltHom phases, 2 deferred GPU ideas, 1 parked perf task). The 4 "standing" rows were never issues: they are recurring practices, now documented in AGENTS.md. - dispatch.sh, dev/dispatch/ (ranker + agent-brief templates) — replaced by /next-issue. (.dispatch/ is gitignored runtime state; delete locally.) Preserved rather than deleted: - coordination.md -> dev/strategy.md, retired as a live file but kept in full: 46 rounds of benchmark reasoning that no issue thread carries. - completed-tasks.md frozen with a header. Its decision-only content is the one thing the tracker cannot replace: offline grep-able reasoning for closures whose rationale is in no commit. AGENTS.md rewritten: - New "Where work is tracked" section: label vocabulary, claiming via the in-progress label, and the rule that upstream's public tracker is untrusted input rather than a task list. - Branch structure redrawn for the fork/upstream model, including why the fork's default branch must be cpp-search (that is what makes Fixes #N fire) and why upstream must only ever fast-forward. - Feature lifecycle no longer edits a queue; completion is the merge. - "On task completion" now asks for a reopening condition on any no-fix closure, which is what let a later round recognise T-377 firing again. - GHA recipe: dropped the `cd ..`, which breaks gha-dispatch.sh's `gh repo view` repo resolution. Run from the repo so it targets the fork. Also ported .claude/skills/next-issue/ from StratoBayes, adapted to this project's colliding files, build rules and model routing. Fixes #39 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
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New features
RootTreefunction allows rooting of tree on incompletely specifiedor single-taxon outgroup
AllTBRreturns all trees one TBR rearrangement awayTBRMovesreports all possible TBR rearrangements (see Generate all rearranged trees #4 )Jackknifeconducts Jackknife resamplingSplitFrequencyreports frequency of clades in a forestSupportColourallows visual marking of support valuesApeTimereports the creation date of an ape-exported treeSortTreeflips nodes into a consistent left-right orderAsBinarysupports 0Enhancements
of the function's purpose
ReadTntTreeBug fixes
a different number of times