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omnideconv

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  1. immunedeconv immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    R 550 103

  2. omnideconv omnideconv Public

    Unified access to several second-generation deconvolution methods

    HTML 111 22

  3. spacedeconv spacedeconv Public

    A unified interface to spatial transcriptomics deconvolution tools

    R 56 9

  4. SimBu SimBu Public

    Simulate pseudo-bulk RNAseq samples from scRNAseq expression data

    R 19 1

  5. deconvMe deconvMe Public

    Runs and compares different methylation based cell type deconvolution algorithms

    R 11

  6. deconvBench deconvBench Public

    Comparison of 2nd generation deconvolution methods implemented in omnideconv

    Jupyter Notebook 10 1

Repositories

Showing 10 of 21 repositories
  • immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    omnideconv/immunedeconv's past year of commit activity
    R 550 103 33 (1 issue needs help) 1 Updated Aug 3, 2026
  • deconvExplorer Public
    omnideconv/deconvExplorer's past year of commit activity
    R 4 GPL-3.0 1 5 2 Updated Aug 3, 2026
  • spacedeconv Public

    A unified interface to spatial transcriptomics deconvolution tools

    omnideconv/spacedeconv's past year of commit activity
    R 56 GPL-3.0 9 0 4 Updated Aug 3, 2026
  • omnideconv Public

    Unified access to several second-generation deconvolution methods

    omnideconv/omnideconv's past year of commit activity
    HTML 111 GPL-3.0 22 23 2 Updated Aug 3, 2026
  • SimBu Public

    Simulate pseudo-bulk RNAseq samples from scRNAseq expression data

    omnideconv/SimBu's past year of commit activity
    R 19 GPL-3.0 1 5 3 Updated Aug 3, 2026
  • omnideconv.github.io Public
    omnideconv/omnideconv.github.io's past year of commit activity
    CSS 2 1 0 1 Updated Jul 10, 2026
  • deconvBench Public

    Comparison of 2nd generation deconvolution methods implemented in omnideconv

    omnideconv/deconvBench's past year of commit activity
    Jupyter Notebook 10 GPL-3.0 1 3 2 Updated Jul 3, 2026
  • deconvMe_analysis Public
    omnideconv/deconvMe_analysis's past year of commit activity
    R 0 0 1 0 Updated Dec 19, 2025
  • SCDC Public Forked from grst/SCDC

    SCDC R package patched and maintained to be used in the omnideconv installation

    omnideconv/SCDC's past year of commit activity
    R 0 13 0 0 Updated Oct 24, 2025
  • deconvMe Public

    Runs and compares different methylation based cell type deconvolution algorithms

    omnideconv/deconvMe's past year of commit activity
    R 11 GPL-3.0 0 1 0 Updated Jul 30, 2025
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