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Update snakemake requirement from ==7.8.* to >=7.8,<7.10 - #503

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dependabot/pip/snakemake-gte-7.8-and-lt-7.10
Jul 21, 2022
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Update snakemake requirement from ==7.8.* to >=7.8,<7.10#503
scottgigante-immunai merged 1 commit into
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dependabot/pip/snakemake-gte-7.8-and-lt-7.10

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@dependabot

@dependabot dependabot Bot commented on behalf of github Jul 20, 2022

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Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

v7.9.0

7.9.0 (2022-07-19)

Features

  • make it possible to exclude rules that will be imported when using 'use rule' statement (#1717) (d9e0611)

Bug Fixes

  • add lock free mechanism for avoiding race conditions when writing persistence information; consider corrupt metadata records as non-existent (#1745) (71fe952)
  • conda python interpreter path on Windows (#1711) (155c9d6)
  • ensures that REncoder also checks for numpy.bool_ in encode_value (#1749) (10a6e1d)
  • Move quiet default after profile parsing (#1764) (6ade76d)
Changelog

Sourced from snakemake's changelog.

7.9.0 (2022-07-19)

Features

  • make it possible to exclude rules that will be imported when using 'use rule' statement (#1717) (d9e0611)

Bug Fixes

  • add lock free mechanism for avoiding race conditions when writing persistence information; consider corrupt metadata records as non-existent (#1745) (71fe952)
  • conda python interpreter path on Windows (#1711) (155c9d6)
  • ensures that REncoder also checks for numpy.bool_ in encode_value (#1749) (10a6e1d)
  • Move quiet default after profile parsing (#1764) (6ade76d)

7.8.5 (2022-06-30)

Documentation

  • fix long description type for pypi (set to markdown) (d8d9b8f)

7.8.4 (2022-06-30)

Bug Fixes

  • only display a warning in case of non-strict channel priorities (#1752) (b84fa33)
  • pass triggers and resources to subworkflow (#1733) (fa7fb75)
  • add pyproject.toml to use setuptools features (#1725) (454bfd1)

Documentation

7.8.3 (2022-06-20)

Bug Fixes

  • allow apptainer as a successor to singularity. (#1706) (bcbdb0b)
  • improved provenance trigger info (#1720) (29d959d)
  • small changes to make docs checkpoint example functional (#1714) (1d4909e)

7.8.2 (2022-06-08)

Bug Fixes

... (truncated)

Commits
  • 9da571f chore(main): release 7.9.0 (#1768)
  • 155c9d6 fix: conda python interpreter path on Windows (#1711)
  • 10a6e1d fix: ensures that REncoder also checks for numpy.bool_ in encode_value (#1749)
  • 6ade76d fix: Move quiet default after profile parsing (#1764)
  • d9e0611 feat: make it possible to exclude rules that will be imported when using 'use...
  • 71fe952 fix: add lock free mechanism for avoiding race conditions when writing persis...
  • 531ef4a chore(main): release 7.8.5 (#1753)
  • d8d9b8f docs: fix long description type for pypi (set to markdown)
  • 760fd47 chore(main): release 7.8.4 (#1744)
  • a5ce054 chore(deps): bump elgohr/Publish-Docker-Github-Action from 2.16 to 4 (#1746)
  • Additional commits viewable in compare view

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@codecov

codecov Bot commented Jul 20, 2022

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Codecov Report

Merging #503 (ca193b9) into main (5932f0a) will not change coverage.
The diff coverage is n/a.

@@           Coverage Diff           @@
##             main     #503   +/-   ##
=======================================
  Coverage   93.68%   93.68%           
=======================================
  Files         103      103           
  Lines        2595     2595           
  Branches      131      131           
=======================================
  Hits         2431     2431           
  Misses        114      114           
  Partials       50       50           
Flag Coverage Δ
unittests 93.68% <ø> (ø)

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@dependabot
dependabot Bot force-pushed the dependabot/pip/snakemake-gte-7.8-and-lt-7.10 branch 2 times, most recently from 20dfa92 to ca2a8ca Compare July 20, 2022 14:35
Updates the requirements on [snakemake](https://github.com/snakemake/snakemake) to permit the latest version.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v7.8.0...v7.9.0)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot
dependabot Bot force-pushed the dependabot/pip/snakemake-gte-7.8-and-lt-7.10 branch from ca2a8ca to ca193b9 Compare July 20, 2022 19:25
@scottgigante-immunai
scottgigante-immunai merged commit f923f03 into main Jul 21, 2022
@scottgigante-immunai
scottgigante-immunai deleted the dependabot/pip/snakemake-gte-7.8-and-lt-7.10 branch July 21, 2022 12:55
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