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production-pipelines
production-pipelines PublicGenomics workflows for CPG using Hail Batch
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ClinvArbitration
ClinvArbitration PublicA side-project from the AIP, containing the code, logic, and documentation for the ClinVar consequence reassessment process in use at the CPG
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cpg-cost-control
cpg-cost-control PublicA Cloud Function to handle GCP billing budget notifications.
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cpg-infrastructure
cpg-infrastructure PublicThis repository is used to manage the infrastructure at the CPG
Repositories
- talos2 Public
Talos, a tool for clinical variant filtering and automated reanalysis, rewritten without hefty Spark/Hail features
- cpg-flow-gatk-sv Public
CPG-Flow implementation of the GATK-SV pipeline, deployed at the Centre for Population Genomics
- cpg-flow-stripy Public
- postern Public
Run untrusted Python in an OS-isolated sandbox whose only exit is a set of host-defined, typed gRPC methods.
- cpg-flow-align-genotype Public
- cpg-flow-lrs-annotation Public
For creating annotated callsets for seqr from long-read-sequencing data
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