feat: allow multithreaded fmindex construction#208
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sarahet merged 3 commits intoMay 9, 2023
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SGSSGene
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Apr 25, 2023
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- updates to newest fmindex
- uses fmindex_collection now uses libsais instead of libdivsufsort
- support for openmp
- adds option to control the thread count for suffix array construction
h-2
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Apr 25, 2023
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Do you know if memory usage changes between libdivsufsort and libsais? Currently, the memory requirements of lambda3's index construction are almost twice as high as lambda2's 😑 |
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No, I don't have any clue. I also don't know what influence the thread number will have on the memory consumption. |
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- This also changes the way that a search with an reversed index is working, so no reversing of the text is required anymore. - Requires to set the numbers of thread used for suffix array construction.
Co-authored-by: Hannes Hauswedell <h2+github.com@fsfe.org>
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