biopython-library

This repo contains Bioinformatics lecture notes using Biopython.

Biobridge is a Python library for simulating biological processes and systems also analyzing them, visualising them, and interacting with them.

Machine Learning on Protein Molecule Sequence

GPU accllerated program for Neighbor-Joining algorithm of Biopython library with PyCUDA

Website contains phylogenetic network of SARS-CoV-2 genomes sampled from across the world. These genomes are closely related and under evolutionary selection in their human hosts The problem is that the usual sites that shows or talks about that topic are complicated for the people who have not studied this kind of materials related to genomics …

Explorando a biblioteca Biopython

Optimization of operations from pairwise2 module in Biopython library

Python-based bioinformatics toolkit for DNA sequence analysis using the BRCA1 reference sequence.

AI-powered codon usage analysis & optimization platform integrating machine learning, SHAP explainability, and Burrows–Wheeler Transform (BWT) features for biologically informed codon recommendation.

Protein Synthesis Project Using Python, BioPython, and BioSQL

Biopython for aligning sequences

Bioinformatics Algorithms is a discipline at my university that aims to provide knowledge about manipulating DNA and RNA sequences using Python.

Script for sorting FASTA sequences by clade in a given tree topology.

Biopython Intro

This program takes in a .gb file (Genome Bank file) and creates a record with all of the features of the genome to create a Circular Genome Diagram.

Solutions for problems on Rosalind

This project explores three core computational challenges in bioinformatics using Python 🐍. It covers the application of the Viterbi algorithm for decoding hidden state sequences, game-theoretic strategies on DNA sequences, and advanced sequence-based games using combinatorial logic.

Investigating unmapped reads within next generation sequencing data will provide additional information regarding the source of the trace microbial reads.

Fetching research papers based on a user-specified query.