CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
(current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
Website about the project WorkflowHub
Introduction to Workflows with Common Workflow Language
This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts
A visualizer of workflow execution records for CWL
Repository for research artefacts produced in the thesis “CWL workflows with MPI in bare-metal, containers, cloud, and HPC”
This code shows the validation of Differential Gene Expression Analysis from RNASeq data using as quantificator tools TPMCalculator
Created by Peter Amstutz, John Chilton, Michael R. Crusoe, Nebojša Tijanić, and the CWL Community
Released January 2015