MACS -- Model-based Analysis of ChIP-Seq
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Jul 7, 2026 - Python
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dnase-seq
Here are 7 public repositories matching this topic...
ATAC-seq and DNase-seq processing pipeline
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Jun 21, 2022 - Python
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
bioinformatics dnase-seq genomics ngs motif chip-seq atac-seq motif-analysis footprinting differential-peak-calling
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Nov 3, 2025 - Python
A unified framework for discovering, analyzing, integrating, and visualizing regulatory motifs and transcription factor binding sites across bulk, single-cell, and long-read sequencing modalities.
dnase-seq motif epigenetics chip-seq atac-seq histone-modifications dna-methylation motif-discovery regulatory-network motif-analysis differential-peak-calling histone-variants epigenome transcription-factor-binding-site open-chromatin-regions regulatory-genomics transcription-factor-footprinting motif-detection transcription-
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Sep 8, 2026 - Python
Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility
dnase-seq transcription-factors atac-seq histone-modifications chromatin-accessibility epigenetic-events
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Aug 30, 2022 - Python
Improving the feature density based peak caller with dynamic statistics
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Feb 3, 2026 - Python
Codes for data processing and figure generation
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May 10, 2018 - Python
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