A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG

A downstream companion for MetaPhlAn (nf-core/taxprofiler), enabling HUMAnN functional and RGI/CARD AMR profiling from shotgun metagenomes.

Metagenomic functional profiling pipeline for reconstructing metabolic pathway abundances and gene families from shotgun sequencing reads. Automates marker-based taxonomic profiling and translated search to quantify community-wide metabolic potential and taxonomically attribute metabolic functions.

Metagenomics and microbiome functional profiling workflows using R, phyloseq and KEGG-based analyses.

Silva OTU count table merger