lab-notebook

Turn Claude Code into an interactive scientific workspace: workflow, file system, and knowledge graph.

Plain-text, git-tracked lab notebook for reproducible bioinformatics — keeps figures in your Markdown notes in sync with the R & Python code that made them, when the notes live outside the analysis. Built for single-cell / CyTOF / flow cytometry; works with Obsidian, Quarto & Jupyter.

A scientific-method lab notebook your AI agent drives — research as a tree of questions and falsifiable hypotheses in plain markdown, with an LLM literature wiki and a browser GUI cockpit.

cleanResearch — traceable, auditable, AI-native research workspace. One folder per project; every claim keeps its evidence chain.

lablog v0.3.1 — bitácora LaTeX-nativa local-first: preview en vivo, celdas, voz, bóveda, PDF Tectonic. Parte del Pharos Project. · pip install jose-labarca-lablog

Google Sheets-first laboratory notebook agent with audited source synchronization, QC lineage, and managed plotting