Molecular Dynamics Simulation of Alanine Dipeptide and Dihedral Angle Analysis
Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides in the Top8000 PDB data set.
A simple script to generate Ramachandran plot from Pymol.
Modules for PDB Data parsing and Ramachandran Analysis.
Offline PDBsum-style interface analyzer — H-bonds, salt bridges, hydrophobic contacts, secondary structure, and Ramachandran plots from any PDB file.
Python implementation of the Ramachandran plot
RamaComp: Compare Ramachandran (φ/ψ) plots across multiple protein structures, side by side, in the browser
Comprehensive educational platform for protein structure exploration including 3D visualization, conservation mapping, chemical property analysis (pH/charge), Ramachandran plots, mutation sandbox, and more.
Extensive clustering analysis of protein conformation, based on the angle study of two bonds of the main chain of proteins, phi and psi angles. Using scikit-learn. Developed with my coding friend @jibrilsharafi
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