Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
coding problems from course 6 of the Bioinformatics specialization
High-performance bioinformatics engine for edge computing. 5-bit encoding, vectorised alignment, DNA→protein translation, and a minimap2-style genome mapper — whole pipeline in C behind a thin NumPy cover. pip install bioforge.
Implementations of core genomic data analysis algorithms, from read mapping and indexing to metagenomic classification.
Pipeline to perform alignment & variant calling on whole-genome sequence data
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