scipion

Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.

Base Scipion plugin defining objects and protocols for CHEMoinformatics

Web app for the Scipion Framework

Scipion plugin for ModelAngelo: an automatic atomic model building program for cryo-EM maps. With or without providing a sequence.

Repository which incorporates the p2rank software in scipion

Scipion framework plugin for the use of tools provided by Autodock software suite

Documentation for the Scipion-chem framework

Adaptation of the Scipion cryo-EM software for Kubernetes by containerizing each processing tool into isolated images, orchestrated through a FastAPI based controller and Helm charts.

GROMACS plug-in for Scipion. Pedro Febrer Martínez Master thesis.

Plugin for using modeller software inside scipion.

Scipion framework plugin for the use of tools provided by Schrodinger software suite

AMBER scipion plugin

Plugin for LePhar docking software

Scipion framework plugin for the use of tools provided in the Rosetta software suite. Currently it has protocols for the use of the Rosetta DARC docking software

Plugin of fpocket software, integrated in the scipion framework

Web Portal for deploying Scipion-in-K8S instances (https://github.com/CERIT-SC/scipion-docker)

Plugin for OpenMM software

Singularity Recipe for scipion

Plugin to run blast in scipion

Utilities from Kihara Lab