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utsavlamichhane/README.md

Utsav Lamichhane

Welcome to my GitHub page! I'm a dedicated researcher specializing in ML models and Microbiome Bioinformatics, currently pursuing my PhD at the University of Georgia. My passion lies in harnessing computational techniques for predictive modeling in Next Generation Sequencing datasets.

Education

  • Ph.D.(ongoing) in Machine Learning and Microbiome Bioinformatics, University of Georgia, Athens, GA, USA.

🛠 Technical Skills

  • Bioinformatics Tools: RNA-Seq, QIIME2, Bioconductor
  • Programming/Scripting: Python, R, Bash
  • Data Analysis: Machine Learning, SQL, Statistical Analysis, TensorFlow
  • High-Performance Computing: Sapelo2 GACRC Cluster, AWS (EC2 and S3)
  • Laboratory Skills: DNA Extraction, PCR, Next Generation Sequencing, and more.

Professional Experience

  • Graduate Research Assistant, University of Georgia (June 2022 - Present)
  • Advising Data Analyst, Sajha Data Solution, Chitwan, Nepal (2017-2021)

Publications

https://scholar.google.com/citations?user=8YFfSMEAAAAJ&hl=en&oi=ao

Recent Projects

  • Normal Human Microbiome Profile of US Residents: Deep analysis of gut microbiome data for ~13,000 healthy individuals.
  • Predicting Rumen Microbiome Composition using Keras Neural Network: Focusing on Angus Bulls, involving DNA extraction, sequencing, and employing a Keras neural network for prediction.

Connect with Me

Feel free to explore my repositories and reach out if you have any questions or ideas for collaboration!


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  1. mbX_0.2.0_official_CRAN_version mbX_0.2.0_official_CRAN_version Public

    R

  2. mbXPro mbXPro Public

    Shell

  3. RNA-seq_docker RNA-seq_docker Public

    Dockerfile

  4. Single_cell_Seq Single_cell_Seq Public

    R

  5. mbX-Pro mbX-Pro Public

    End-to-end reproducible 16S pipeline

    R